Closed LiNk-NY closed 4 years ago
We have the same issue for our workshop (iSEE: Interactive visualization of SummarizedExperiment objects), where the GitHub username != the Docker Hub username.
Workshop: https://github.com/iSEE/iSEEWorkshop2020
Docker image: iseedevelopers/iseeworkshop2020:latest
Thanks Charlotte
Thank you for pointing that out. This is because the table is manually created. The current pull request fixes both issues, as well as corrects titles. But in retrospect, we should have a package that would pull the correct information from the DESCRIPTION files and generate the table automatically. Can this be an idea for a hackathon?
Mikhail
On Mon, Jun 8, 2020 at 12:48 PM Charlotte Soneson notifications@github.com wrote:
We have the same issue for our workshop (iSEE: Interactive visualization of SummarizedExperiment objects), where the GitHub username != the Docker Hub username.
Workshop: https://github.com/iSEE/iSEEWorkshop2020 Docker image: iseedevelopers/iseeworkshop2020:latest
Thanks Charlotte
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Pull request #77 closes it, when merged
Hi Mikhail, @mdozmorov
I'm not sure a package is necessary. Perhaps it can be done using an .Rmd
file to generate the .md
file. I can give it a try some time today.
-Marcel
Thank you, Marcel. I'm not sure about the best way, have been thinking about a function that accepts a list of GitHub URLs, pulls workshop information from the DESCRIPTION files, and compiles the Markdown table. I can't get to it this week, please, help if you can. Mikhail
Hi Mikhail @mdozmorov and Lorena @lpantano
The Docker link in the workshops page for
Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
does not agree with theDESCRIPTION
file in the workshop:https://github.com/waldronlab/MultiAssayWorkshop/blob/0501f784d83eeb236cc06e2e3bbd86bb647ea4ed/DESCRIPTION#L49
For some reason, the link points to
waldronlab/multiassayworkshop
. Thank you for your help. -Marcel