Bioconductor BiocFileCache issues

Bioconductor / BiocFileCache

Manage Files Across Sessions

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issues

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Small fixes to documentation

#53 Shians closed 2 months ago
2
Failure to query bfc using url containing special characters

#52 Shians closed 2 months ago
1
overriding rpath filename when downloading

#51 grlloyd opened 8 months ago
3
Explicitly name argument `n` in `collect()`

#50 mgirlich closed 1 year ago
2
Reducing the number of package dependencies

#49 mjsteinbaugh closed 1 year ago
6
curl error with bfcrpath: HTTP/2 stream 1 was not closed cleanly: PROTOCOL_ERROR (err 1)

#48 lcolladotor closed 5 months ago
18
Problem with remote files with whitespaces in the file name

#47 jorainer closed 1 year ago
9
Fix argument mismatch of generic to function for bfcupdate

#46 lshep closed 1 year ago
4
Update BiocFileCache.Rmd

#45 federicomarini closed 1 year ago
0
stale cached file not updated when calling `bfcupdate` with `rid`

#44 LiNk-NY closed 1 year ago
2
Option no unique identifier

#43 lshep closed 2 years ago
2
How to query and add atomically?

#42 romanzenka opened 2 years ago
3
Error in removebfc in an interactive session

#41 sdgamboa closed 2 years ago
1
option for not having unique identifier

#40 lshep closed 2 years ago
8
Cannot lock file

#39 ZheFrench closed 2 years ago
2
bfcquery[['rpath']] is not the same as bfcrpath()

#38 LiNk-NY closed 2 years ago
3
Update remote file only when changed

#37 chrarnold closed 2 years ago
10
set expiration date for web resource

#36 LiNk-NY opened 2 years ago
2
manual build of vignette fails

#35 vjcitn closed 2 years ago
1
Add @LTLA solution for making bfcrpath thread-safe

#34 lshep closed 2 years ago
1
bfcrpath is not thread-safe

#33 LTLA closed 2 years ago
0
Avoid loading in the entire DB on various queries.

#32 LTLA closed 2 years ago
1
cleanbfc uses wrong format strings

#31 LTLA closed 3 years ago
0
BiocFileCache:::.sql_db_execute(): Partial argument match of 'param' to 'params'

#30 HenrikBengtsson closed 3 years ago
1
tools::R_user_dir vs rappdirs::user_cache_dir

#29 lgeistlinger closed 3 years ago
5
Is BiocFileCache's directory structure "scratch-safe"?

#28 LTLA closed 3 years ago
2
Added file locking for thread-safe SQL operations.

#27 LTLA closed 3 years ago
17
bfcquery returns inconsistent column types for empty rows

#26 omsai opened 4 years ago
2
Mention use of days=-Inf to delete cache contents.

#25 LTLA closed 4 years ago
2
Wipe cache contents without destroying it

#24 LTLA closed 4 years ago
2
Deprecated dplyr functions cause check warnings

#23 tfkillian closed 4 years ago
1
avoid link 'does not exist' documentation error

#22 mtmorgan closed 4 years ago
4
ask and report use of temporary cache once per session

#21 mtmorgan closed 4 years ago
0
tests fail due to stats URL 404ing

#20 mr-c closed 4 years ago
2
Add makeCachedActiveBinding()

#19 hpages closed 4 years ago
4
`BiocFileCache()` inducing R abort

#18 robertamezquita closed 5 years ago
2
file comparison only on Date will miss updates on edge case of same day updates

#17 lshep closed 5 years ago
4
prompt wraps poorly on macOS

#16 mtmorgan opened 5 years ago
1
example(bfcmeta) can throw error

#15 vjcitn closed 5 years ago
2
bfcneedsupdate() fails when last_modified_time is NA

#14 Shians closed 5 years ago
7
Disable progress bar in bfcrpath

#13 LTLA closed 6 years ago
3
web file check

#12 lshep opened 6 years ago
0
bfcrpath seems to dislike URLs with odd characters

#11 LTLA closed 6 years ago
2
rpath arguments should do exact matching

#10 lwaldron closed 6 years ago
2
use `file.copy` instead of `file.rename`

#9 LiNk-NY opened 6 years ago
10
Cached files should remember 'Expires' / 'Max-age' headers

#8 mtmorgan closed 6 years ago
1
add 'ask=' to BiocFileCache

#7 mtmorgan closed 6 years ago
0
Default path on Windows not usable

#6 FelixErnst closed 6 years ago
7
Using file hash instead of last modified time to check for cached file

#5 lcougnaud closed 6 years ago
1
Brainstorming: multiple cache locations handled like .libPaths()

#4 kevinrue closed 6 years ago
2