bioc-issue-bot
commented
2 years ago Hi @rossinerbe
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: ATACCoGAPS
Title: Analysis Tools for scATACseq Data with CoGAPS
Version: 0.99.0
Authors@R:
person(given = "Rossin",
family = "Erbe",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-3423-2104"),
email = "rerbe1@jhmi.edu")
Description: Provides tools for running the CoGAPS algorithm (Fertig et al, 2010) on single-cell ATAC sequencing data and analysis of the results. Can be used to perform analyses at the level of genes, motifs, TFs, or pathways. Additionally provides tools for transfer learning and data integration with single-cell RNA sequencing data.
License: Artistic-2.0
Depends:
R (>= 3.5.0),
CoGAPS (>= 3.5.13)
Imports:
gtools,
GenomicRanges,
projectR,
TFBSTools,
GeneOverlap,
msigdbr,
tidyverse,
gplots,
motifmatchr,
chromVAR,
GenomicFeatures,
IRanges,
fgsea,
rGREAT,
JASPAR2016,
Homo.sapiens,
Mus.musculus
biocViews: GenomicFeatures, CoGAPS
BiocType: Software
RoxygenNote: 7.1.1
Encoding: UTF-8
Suggests:
knitr
VignetteBuilder: knitr
vjcitn
rossinerbe
lshep
Kayla-Morrell
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