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alabaster.schemas #2894

Closed LTLA closed 1 year ago

LTLA commented 1 year ago

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

I am familiar with the essential aspects of Bioconductor software management, including:

For questions/help about the submission process, including questions about the output of the automatic reports generated by the SPB (Single Package Builder), please use the #package-submission channel of our Community Slack. Follow the link on the home page of the Bioconductor website to sign up.

bioc-issue-bot commented 1 year ago

Hi @LTLA

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: alabaster.schemas
Title: Schemas for the Alabaster Framework
Version: 0.99.0
Date: 2023-01-10
License: MIT + file LICENSE
Description:
    Stores all schemas required by various alabaster.* packages.
    No computation should be performed by this package, as that is handled by alabaster.base.
    We use a separate package instead of storing the schemas in alabaster.base itself,
    to avoid conflating management of the schemas with code maintenence.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com")
RoxygenNote: 7.2.0
biocViews:
    DataRepresentation,
    DataImport
Suggests:
    knitr,
    rmarkdown
VignetteBuilder: knitr
LTLA commented 1 year ago

For context, this will be followed by all alabster-prefixed packages in https://github.com/ArtifactDB.

bioc-issue-bot commented 1 year ago

A reviewer has been assigned to your package. Learn what to expect during the review process.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

Bioconductor utilized your github ssh-keys for git.bioconductor.org access. To manage keys and future access you may want to active your Bioconductor Git Credentials Account

bioc-issue-bot commented 1 year ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/alabaster.schemas to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.base

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.base. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

Nudge. There's still 9 more AdditionalPackage packages to go.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.ranges

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.ranges. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.matrix

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.matrix. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.se

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.se. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/LTLA/chihaya-R

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/LTLA/chihaya-R. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/LTLA/alabaster.sce

bioc-issue-bot commented 1 year ago

Dear @LTLA ,

There is no repository called https://github.com/LTLA/alabaster.sce . You must submit the url to a valid, public GitHub repository. I am closing this issue. Please try again with a new issue.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.sce

bioc-issue-bot commented 1 year ago

Can't build unless issue is open and '2. review in progress' label is present, or issue is closed and 'TESTING' label is present.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.sce

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.sce. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.spatial

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.spatial. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.bumpy

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.bumpy. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.mae

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.mae. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.string

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.string. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster.vcf

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster.vcf. We are taking a quick look at it and you will hear back from us soon.

LTLA commented 1 year ago

AdditionalPackage: https://github.com/ArtifactDB/alabaster

bioc-issue-bot commented 1 year ago

Hi @LTLA, Thanks for submitting your additional package: https://github.com/ArtifactDB/alabaster. We are taking a quick look at it and you will hear back from us soon.

vjcitn commented 1 year ago
    * ERROR: Maintainer must add package name to Watched Tags on the
      support site; Edit your Support Site User Profile to add Watched
      Tags.

That's for bumpy. Please take care of this for all alabaster* pks.

LTLA commented 1 year ago

Done.

vjcitn commented 1 year ago
* Checking for support site registration...
    * ERROR: Maintainer must register at the support site; visit
      https://support.bioconductor.org/accounts/signup/

for alabaster.spatial...

LTLA commented 1 year ago

AFAICT it was already added. Screenshot from 2023-01-30 22-26-37

vjcitn commented 1 year ago

OK, maybe there's a bug in BiocCheck... @LiNk-NY ? Anyway the pre-check is passed, it will be in the single-package builder soon.

bioc-issue-bot commented 1 year ago

Additional Package has been approved for building.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

bioc-issue-bot commented 1 year ago

Additional Package has been approved for building.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

bioc-issue-bot commented 1 year ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "WARNINGS". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/alabaster.base to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 1 year ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/alabaster.ranges to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 1 year ago

Additional Package has been approved for building.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

bioc-issue-bot commented 1 year ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR, skipped". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/alabaster.matrix to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 1 year ago

Additional Package has been approved for building.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

bioc-issue-bot commented 1 year ago

Additional Package has been approved for building.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

bioc-issue-bot commented 1 year ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/alabaster.se to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 1 year ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR, skipped". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/chihaya-R to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 1 year ago

Additional Package has been approved for building.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

bioc-issue-bot commented 1 year ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/alabaster.sce to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.