Closed LTLA closed 1 year ago
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Received a valid push on git.bioconductor.org; starting a build for commit id: 57bbac9acb2aeecdfa7a3477f047c4cd87bcda6f
Received a valid push on git.bioconductor.org; starting a build for commit id: 46a508e4a6c533a8296be49c7a49ef97a6008785
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@vjcitn What are we missing at this point? Not sure how to check the status of all packages, but things look green so far.
yes i am about to accept but on vacation
On Fri, Feb 24, 2023 at 2:05 AM Aaron Lun @.***> wrote:
@vjcitn https://github.com/vjcitn What are we missing at this point? Not sure how to check the status of all packages, but things look green so far.
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There are a few that never got rerun and were ERRORing on the build machine -- they need to be rerun and pass first: alabaster.bumpy alabaster.ranges alabaster.spatial alabaster.string alabaster.vcf
Received a valid push on git.bioconductor.org; starting a build for commit id: 5a86f5a56dac1b2ebaeabd669defaac53f2b5db8
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Received a valid push on git.bioconductor.org; starting a build for commit id: e90b46a329dd207564a8282eb54aa51fac93d3f9
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Received a valid push on git.bioconductor.org; starting a build for commit id: 7ea70ba49e5c43f2aa12dba6442f7d26b53ea2d0
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Received a valid push on git.bioconductor.org; starting a build for commit id: 0964853f9cc7a462f304ecaee058925792e2aa52
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Received a valid push on git.bioconductor.org; starting a build for commit id: f4fc025e23f013b80b13841a7e2a1231ba346692
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Looks like the SPB broke on the latest round of pushes.
===============================
R CMD BUILD
===============================
* checking for file alabaster.vcf/DESCRIPTION ... OK
* preparing alabaster.vcf:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
-----------------------------------
* installing *source* package alabaster.vcf ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: package SummarizedExperiment required by VariantAnnotation could not be found
Execution halted
ERROR: lazy loading failed for package alabaster.vcf
* removing /tmp/RtmpKyWM2B/Rinstb09a424b788b3/alabaster.vcf
-----------------------------------
ERROR: package installation failed
and
===============================
R CMD BUILD
===============================
* checking for file alabaster.vcf/DESCRIPTION ... OK
* preparing alabaster.vcf:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
-----------------------------------
* installing *source* package alabaster.vcf ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for alabaster.base in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called Rhdf5lib
Execution halted
ERROR: lazy loading failed for package alabaster.vcf
* removing /private/var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T/Rtmp5XFERz/Rinst99413b1ad863/alabaster.vcf
-----------------------------------
ERROR: package installation failed
Received a valid push on git.bioconductor.org; starting a build for commit id: b29eee9296a6a54af8bac72941530d7632d19701
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@lshep All clear except for alabaster.vcf, which has failed for cryptic reasons - see comment above.
yes probably the unlucky timing of the restart of builds for the day. -- clearing now -- thanks for this!
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