bioc-issue-bot
commented
11 months ago Hi @auroramaurizio
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: SurfR
Type: Package
Title: Surface Protein Prediction and Identification
Version: 0.99.0
Authors@R:c(person("Aurora", "Maurizio", email="auroramaurizio1@gmail.com", role = c("aut","cre")),
person("Anna Sofia", "Tascini", email="volpesofi@gmail.com", role = c("aut", "ctb")))
Description: Identify Surface Protein coding genes from a list of candidates.
Systematically download data from GEO and TCGA or use your own data.
Perform DGE on bulk RNAseq data.
Perform Meta-analysis. Descriptive enrichment analysis and plots.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Software, Sequencing, RNASeq, GeneExpression, Transcription, DifferentialExpression,
PrincipalComponent, GeneSetEnrichment, Pathways, BatchEffect,
FunctionalGenomics, Visualization, DataImport
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Imports:
httr,
SPsimSeq,
DESeq2,
edgeR,
rio,
openxlsx,
stringr,
rhdf5,
ggplot2,
ggrepel,
stats,
magrittr,
assertr,
tidyr,
dplyr,
TCGAbiolinks,
biomaRt,
metaRNASeq,
enrichR,
scales,
venn,
gridExtra,
SummarizedExperiment,
knitr,
grDevices,
graphics,
utils
auroramaurizio
PeteHaitch
lshep
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