bioc-issue-bot
commented
7 years ago Hi @antagomir
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: microbiome
Type: Package
Title: Microbiome Analytics
Description: Utilities for microbiome analysis.
Encoding: UTF-8
Version: 0.99.2
Date: 2017-06-04
Authors@R: c(
person("Leo", "Lahti", email = "leo.lahti@iki.fi", role = c("aut", "cre")),
person("Sudarshan", "Shetty", role = "ctb"),
person("Jarkko", "Salojarvi", role = "ctb"))
biocViews: Clustering, Metagenomics, Microbiome, Sequencing, SystemsBiology
License: BSD_2_clause + file LICENSE
Depends:
R (>= 3.4.0),
phyloseq
Imports:
ade4,
dplyr,
ggplot2,
graphics,
grDevices,
MASS,
moments,
plyr,
reshape2,
scales,
stats,
tidyr,
utils,
vegan,
WGCNA
Suggests:
BiocGenerics,
BiocStyle,
Cairo,
devtools,
DESeq2,
diptest,
FD,
GGally,
gcookbook,
ggnet,
gridExtra,
Hmisc,
hrbrthemes,
igraph,
intergraph,
knitcitations,
knitr,
limma,
lme4,
magrittr,
netresponse,
network,
RColorBrewer,
rmarkdown,
sna,
SpiecEasi,
structSSI,
testthat,
tidyverse,
viridis
URL: http://microbiome.github.io/microbiome
MailingList: microbiome <microbiome-devel@googlegroups.com>
BugReports: https://github.com/microbiome/microbiome/issues
VignetteBuilder: knitr
Packaged: 2014-09-14 14:19:39 UTC; lei
RoxygenNote: 6.0.1
mtmorgan
antagomir
vobencha
hpages
GitHub repository of the package we wish to submit to Bioconductor
Note: this is a resubmission of the microbiome package in Bioconductor after the package has been completely rewritten following the feedback from H. Pages in 10/2014 (tracker.fhcrc.org/roundup/bioc_submit/issue1031). Therefore the verrsion number is 0.99.2 rather than 0.99.0 but the submission system has changed and as far as I can see, opening a new issue is the cleanest way to get forward.
Confirm the following by editing each check box to '[x]'
[X] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.
[X] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
[X] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[X] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
[X] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.
I am familiar with the essential aspects of Bioconductor software management, including:
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