Closed shaileshtripathi closed 7 years ago
Hi @shaileshtripathi
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: samExploreR
Type: Package
Title: samExploreR package: high-performance read summarisation to
count vectors with avaliability of sequencing depth reduction
simulation
Version: 1.0.0
Depends: ggplot2,pBrackets,colorspace
Author: Alexey Stupnikov, Shailesh Tripathi and Frank Emmert-Streib with contributions from Wei Shi and Yang Liao
Maintainer: Alexey Stupnikov,Shailesh Tripathi <email@mail>
Description: This R package is designed for subsampling procedure to
simulate sequencing experiments with reduced sequencing depth.
This package can be used to anlayze data generated from all
major sequencing platforms such
as Illumina GA/HiSeq/MiSeq, Roche GS-FLX, ABI SOLiD and
LifeTech Ion PGM/Proton sequencers. It supports multiple
operating systems incluidng Linux, Mac OS X, FreeBSD and
Solaris.
Was developed with usage of Rsubread 1.16.1
URL:
License: GPL-3
LazyLoad: yes
Suggests: BiocStyle,RUnit,BiocGenerics,Matrix
biocViews: Sequencing, SequenceMatching, RNASeq, ChIPSeq, DNASeq,
WholeGenome, GeneTarget, Alignment, GeneExpression,
GeneticVariability, GeneRegulation, Preprocessing,
GenomeAnnotation, Software
Packaged: 2015-07-28 13:59:18 UTC; stripathi
NeedsCompilation: yes
Your package has been approved for building. Your package is now submitted to our queue.
IMPORTANT: Please read the instructions for setting up a push hook on your repository, or further changes to your repository will NOT trigger a new build.
Hi -- It looks like this package contains extensive code from (R)subread. Instead of including this code, please re-factor your package so that it Imports: Rsubread and uses functionality available through Rsubread's public API. Please also take some time to format your code, e.g., using the prettyR package, so that it is more readable.
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160718140111.html
Received a valid push; starting a build. Commits are:
9bd5d25 bioconductor update new
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160727050415.html
Received a valid push; starting a build. Commits are:
2a345da DESCRIPTION update new
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160727070704.html
Received a valid push; starting a build. Commits are:
0ffbb61 vignettes updated
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160727095707.html
Received a valid push; starting a build. Commits are:
1ae08f6 New DESCRIPTION
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160728073105.html
Received a valid push; starting a build. Commits are:
a727e58 updated configure
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160728074236.html
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160728104835.html
Received a valid push; starting a build. Commits are:
5975ca2 updated configure file 28072016_3
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160728110443.html
Received a valid push; starting a build. Commits are:
5db6a98 new update 28072016_3
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160728114956.html
We only start builds when the Version
field in the DESCRIPTION
file is incremented. For example, by changing
Version: 0.99.0
to
Version 0.99.1
If you did not intend to start a build, you don't need to
do anything. If you did want to start a build, increment
the Version:
field and try again.
Received a valid push; starting a build. Commits are:
1ffb012 new ver
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160728120229.html
We only start builds when the Version
field in the DESCRIPTION
file is incremented. For example, by changing
Version: 0.99.0
to
Version 0.99.1
If you did not intend to start a build, you don't need to
do anything. If you did want to start a build, increment
the Version:
field and try again.
Received a valid push; starting a build. Commits are:
4929cea configure update new
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160728193751.html
Received a valid push; starting a build. Commits are:
bb2ffdb update permisson configure
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160729055252.html
We only start builds when the Version
field in the DESCRIPTION
file is incremented. For example, by changing
Version: 0.99.0
to
Version 0.99.1
If you did not intend to start a build, you don't need to
do anything. If you did want to start a build, increment
the Version:
field and try again.
Received a valid push; starting a build. Commits are:
0003cd9 version update1
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160729063410.html
We only start builds when the Version
field in the DESCRIPTION
file is incremented. For example, by changing
Version: 0.99.0
to
Version 0.99.1
If you did not intend to start a build, you don't need to
do anything. If you did want to start a build, increment
the Version:
field and try again.
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160729072105.html
Received a valid push; starting a build. Commits are:
37eafd1 modified rwrapper
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160729073440.html
Received a valid push; starting a build. Commits are:
e4b0d56 new modification Rwrapper
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160729074634.html
Received a valid push; starting a build. Commits are:
133e812 new modification Rwrapper1
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160729075353.html
Received a valid push; starting a build. Commits are:
8be270f new modification Rwrapper2
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160729075931.html
Received a valid push; starting a build. Commits are:
af486cb rwrapper modification
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160730074938.html
My package is building fine on Mac and Linux servers. I found one problem on windows server that it is not able to find "Rnterface.h" header file, it is giving following error, Rinterface.h: No such file or directory. How can I solve this problem.
Also one more check error which is "REQUIRED: Maintainer should subscribe to the bioc-devel mailing" I have already subscribed to the mailing list but not approved yet.
Hi @mtmorgan My package is building fine on Mac and Linux servers. I found one problem on windows server that it is not able to find "Rnterface.h" header file, it is giving following error, Rinterface.h: No such file or directory. How can I solve this problem.
Also one more check error which is "REQUIRED: Maintainer should subscribe to the bioc-devel mailing" I have already subscribed to the mailing list but not approved yet.
Received a valid push; starting a build. Commits are:
4476451 new version
Dear Package contributor,
This is the automated single package builder at bioconductor.org.
Your package has been built on Linux, Mac, and Windows.
On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.
Please see the following build report for more details:
http://bioconductor.org/spb_reports/samExploreR_buildreport_20160802055227.html
@shaileshtripathi from Rinterfaces.h
/* This header file is to provide hooks for alternative front-ends,
e.g. GUIs such as GNOME and Cocoa. It is only used on Unix-alikes.
so the header is not present on Windows. Also, please note my comment from 15 days ago about the appropriate way to use Rsubread -- via the existing package R API, rather than by including its source code again.
@mtmorgan Hi Martin
I am aware that I should have imported the Rsubread API, but when I want to use that API I realized that they don't provide enough flexibility so that we could import functions and to analyze RNA-seq data, so we made necessary modifications inside existing functions in Rsubread and keep them for the package. We would develop our own set of API for this analysis and update that in couple of months. But for a while we want to keep the current code in the package.
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
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