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Bioconductor
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GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
https://bioconductor.org/packages/GenomeInfoDb
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error in seqlevelsStyle()
#110
yloskove
closed
3 months ago
3
error: seqlevelsStyle(annotations) <- 'UCSC'
#109
Kateahn
opened
6 months ago
10
renaming Seqlevels of a forged BSgenome to match an annotation file
#108
hannahvanm
closed
5 months ago
2
Error in seqlevelsStyle(annotations) <- "UCSC"
#107
Syayaq
closed
6 months ago
1
move RCurl to Suggests and use try-error
#106
LiNk-NY
closed
6 months ago
3
Error on setting `seqlevelsStyle(gal) <- "RefSeq"`
#105
rcastelo
opened
7 months ago
4
download and parsing error in function call getChromInfoFromUCSC(genome = "hg19")
#104
maximilian-leitheiser
closed
7 months ago
1
Unable to fetch seq info. Server down?
#103
daanhazelaar
closed
7 months ago
1
Error in chromInfo file download when running seqlevelsStyle()
#102
Enterprise-D
closed
7 months ago
3
Please help adding Xenopus tropicalis to GenomeInfoDb package
#101
clarkzor
closed
7 months ago
1
Registering ARS-UI_Ramb_v2.0 Genome
#100
edicliuyang
closed
7 months ago
6
BUG: list_ftp_dir() chokes when going via proxy server because it drops the URI protocol
#99
HenrikBengtsson
closed
9 months ago
13
`getChromInfoFromEnsembl` is erroring for some previous Mus musculus releases
#98
mjsteinbaugh
closed
8 months ago
3
`getChromInfoFromEnsembl` is erroring for GRCh37 genome build
#97
mjsteinbaugh
closed
8 months ago
4
GenomeInfoDb - Registering the Sea Lamprey Genome
#96
hannahvanm
closed
10 months ago
3
GenomeInfoDb::Seqinfo() may attach packages to the users' session
#95
mtmorgan
closed
11 months ago
1
seqlevelsStyle -- supporting offline use?
#94
vjcitn
opened
11 months ago
1
Packaging issue with conda/bioconda
#93
gdevenyi
closed
1 year ago
6
Trying to install GenomeInfoDB, GenomeInfoDBData, and Matrix all lead to non-zero exit status
#92
genferreri
closed
1 year ago
6
Enable offline mode for gorGor6
#91
kakopo
closed
1 year ago
0
Link gorGor6 (UCSC genome) to Kamilah_GGO_v0 (NCBI assembly)
#90
kakopo
closed
1 year ago
8
Register NCBI assembly Kamilah_GGO_v0
#89
kakopo
closed
1 year ago
0
Register UCSC genome gorGor6
#88
kakopo
closed
1 year ago
2
Register UCSC genome gorGor6
#87
kakopo
closed
1 year ago
0
Error of seqlevelsStyle showing !anyNA(m32) is not TRUE
#86
Yijia-Jiang
closed
1 year ago
1
Installation non-zero exit status issue
#85
jackbrougher
closed
1 year ago
2
I am having trouble retrieving annotation from hg38 using the GenomeInfoDb package.
#84
gnwwanne
closed
1 year ago
3
`Seqinfo` is now broken with UCSC hg38 (v1.34.7)
#83
mjsteinbaugh
closed
1 year ago
1
getChromInfoFromUCSC: anyNA(m32) is not TRUE error for hg38
#82
chrarnold
closed
1 year ago
20
New genbank accession prefix `MU`
#81
wresch
closed
1 year ago
1
Register NCBI assembly bStrHab1.2.pri
#80
kakopo
closed
1 year ago
1
Mapping Ensembl seqlevels to UCSC for Mmul_10/rheMac10
#79
hpages
opened
1 year ago
2
Registration request for Catharus ustulatus NCBI assembly
#78
sopeadeniji
closed
1 year ago
10
Add 'organism' argument to registered_UCSC_genomes()
#77
kakopo
closed
1 year ago
5
sweave2rmd: Convert Accept-organism-for-GenomeInfoDb.Rnw to .Rmd
#76
hsadia538
closed
1 year ago
1
Enable "offline mode" for xenTro10
#75
Simplecodez
closed
1 year ago
0
Link xenTro10 (UCSC genome) to UCB_Xtro_10.0 (NCBI assembly)
#74
Simplecodez
closed
1 year ago
0
Link xenTro10 (UCSC genome) to UCB_Xtro_10.0 (NCBI assembly)
#73
Simplecodez
closed
1 year ago
0
Add 'organism' argument to registered_UCSC_genomes()
#72
hpages
closed
1 year ago
10
Register UCSC genome xenTro10
#71
Simplecodez
closed
1 year ago
0
Register NCBI assembly UCB_Xtro_10.0
#70
Simplecodez
closed
1 year ago
3
Register NCBI assembly UCB_Xtro_10.0
#69
Simplecodez
closed
1 year ago
3
Register NCBI assembly UCB_Xtro_10.0
#68
Simplecodez
closed
1 year ago
0
Xenopus tropicalis
#67
Simplecodez
closed
1 year ago
0
Enable "offline mode" for felCat9
#66
kakopo
closed
1 year ago
4
Link felCat9 (UCSC genome) to Felis_catus_9.0 (NCBI assembly)
#65
kakopo
closed
1 year ago
0
Register NCBI assembly Felis_catus_9.0
#64
kakopo
closed
1 year ago
0
Proposed contribution task for Outreachy applicants: Enable "offline mode" for gorGor6
#63
hpages
closed
1 year ago
2
Proposed contribution task for Outreachy applicants: Link gorGor6 (UCSC genome) to Kamilah_GGO_v0 (NCBI assembly)
#62
hpages
closed
1 year ago
1
Proposed contribution task for Outreachy applicants: Register NCBI assembly Kamilah_GGO_v0
#61
hpages
closed
1 year ago
1
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