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Bioconductor
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GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
https://bioconductor.org/packages/GenomeInfoDb
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Proposed contribution task for Outreachy applicants: Register UCSC genome gorGor6
#60
hpages
closed
1 year ago
3
Register felCat9
#59
kakopo
closed
2 years ago
7
Enable Canfam6 offline mode
#58
Priceless-P
closed
2 years ago
0
Proposed contribution task for Outreachy applicants: Enable "offline mode" for felCat9
#57
hpages
closed
2 years ago
6
Proposed contribution task for Outreachy applicants: Enable "offline mode" for xenTro10
#56
hpages
closed
2 years ago
11
Proposed contribution task for Outreachy applicants: Enable "offline mode" for canFam6
#55
hpages
closed
2 years ago
6
Link canFam6 to Dog10K_Boxer_Tasha
#54
Priceless-P
closed
2 years ago
0
Register NCBI assembly Dog10 k boxer tasha
#53
Priceless-P
closed
2 years ago
2
Register canFam6
#52
Priceless-P
closed
2 years ago
3
Proposed contribution task for Outreachy applicants: Link felCat9 (UCSC genome) to Felis_catus_9.0 (NCBI assembly)
#51
hpages
closed
2 years ago
7
Proposed contribution task for Outreachy applicants: Register NCBI assembly Felis_catus_9.0
#50
hpages
closed
2 years ago
14
Proposed contribution task for Outreachy applicants: Register UCSC genome felCat9
#49
hpages
closed
2 years ago
19
Proposed contribution task for Outreachy applicants: Link xenTro10 (UCSC genome) to UCB_Xtro_10.0 (NCBI assembly)
#48
hpages
closed
2 years ago
8
Proposed contribution task for Outreachy applicants: Register NCBI assembly UCB_Xtro_10.0
#47
hpages
closed
2 years ago
41
Proposed contribution task for Outreachy applicants: Register UCSC genome xenTro10
#46
hpages
closed
2 years ago
16
Proposed contribution task for Outreachy applicants: Link canFam6 (UCSC genome) to Dog10K_Boxer_Tasha (NCBI assembly)
#45
hpages
closed
2 years ago
9
Proposed contribution task for Outreachy applicants: Register NCBI assembly Dog10K_Boxer_Tasha
#44
hpages
closed
2 years ago
20
Proposed contribution task for Outreachy applicants: Register UCSC genome canFam6
#43
hpages
closed
2 years ago
17
Error: package or namespace load failed for ‘GenomeInfoDb’; there is no package called ‘GenomeInfoDbData’
#42
chancharikmitra
closed
2 years ago
5
Genome info db rmd
#41
villafup
closed
1 year ago
2
Accepting organism
#40
villafup
closed
1 year ago
2
Convert genomeinfodb
#39
villafup
closed
1 year ago
5
wip Conversion add Rmd, feedback requested
#38
villafup
closed
1 year ago
4
GRCh38.p14 covers T2T-CHM13 information, correct?
#37
Shicheng-Guo
closed
2 years ago
2
Registration request for Acyrthosiphon pisum NCBI assembly
#36
Scottyzy
closed
2 years ago
3
seqlevelsStyle time out
#35
haozhaozhe
closed
2 years ago
11
'new2old' not supported in 'seqinfo<-,DNAStringSet-method'
#34
susheelbhanu
closed
2 years ago
5
Getting error in installing GenomeInfoDb
#33
beginner984
closed
2 years ago
4
Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
#32
sanchit-saini
closed
3 years ago
2
Issue with seqlevelStyle()
#31
yuhsinhsieh-josch
closed
3 years ago
1
Problem with Seqinfo(genome="hg38")
#30
csijcs
closed
3 years ago
5
installation of GenomeInfoDbData failed
#29
qlan20
closed
2 years ago
1
Mmusculus.v79 UCSC/NCBI chr name name mismatch.
#28
mzytnicki
closed
3 years ago
3
Problem on scaffold name (mm10)
#27
mzytnicki
closed
3 years ago
21
Caching seqinfo
#26
jeff-mandell
opened
3 years ago
7
Issue with setting `seqlevelStyle()`
#25
Kayla-Morrell
closed
3 years ago
2
Registration request for Patiria miniata NCBI assembly
#24
andradejon
closed
3 years ago
5
GenomeInfoDb for non- NCBI or -UCSC assemblies/genomes
#23
aybugealtay
closed
3 years ago
2
Error in .make_Seqinfo_from_genome(genome)
#22
liqian-ma
closed
3 years ago
2
`getChromInfoFromEnsembl()` fails with Ensembl 103 for GenomeInfoDb 1.26.2 (Bioc 3.12)
#21
mjsteinbaugh
closed
3 years ago
16
Windows build error
#20
igordot
closed
2 years ago
1
N-ary nature of merge,Seqinfo,Seqinfo-method is not documented.
#19
LTLA
closed
3 years ago
1
Seqinfo constructor should auto-fill seqlevels= when seqlengths= is named
#18
LTLA
closed
3 years ago
1
Update to Callithrix_jacchus.R
#17
alutservitz
closed
3 years ago
1
Utilize UCSC REST API to retrieve Seqinfo
#16
sanchit-saini
closed
3 years ago
6
GenomeInfoDB can not be installed
#15
nfarnoud
closed
3 years ago
3
Changing seqlevelsStyle of BSgenome fails because of multiple genomes
#14
csoneson
closed
4 years ago
2
seqlevelsStyle setter does not work with specific genome build
#13
LiNk-NY
closed
4 years ago
3
unable to find an inherited method for function ‘seqinfo<-’ for signature ‘"TxDb"’
#12
lima1
closed
4 years ago
7
Installing DESeq2 Error: no package called ‘GenomeInfoDbData’
#11
emailjack
closed
3 years ago
5
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