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Bioconductor
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GenomicAlignments
Representation and manipulation of short genomic alignments
https://bioconductor.org/packages/GenomicAlignments
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summarizeOverlaps warnings
#36
sunta3iouxos
opened
4 weeks ago
3
Selectable within alignment coordinate options for soft/hard clipped …
#35
fedxa
opened
10 months ago
0
Fix of mapToAlignments emitting extra ranges for mapping to the skipped positions at start
#34
fedxa
closed
10 months ago
1
Error in isCompatibleWithSkippedExons() for single-end read alignments w/ more than 3 junctions
#33
rcastelo
opened
11 months ago
0
Bugfix in isCompatibleWithSkippedExons() for single-end read alignments w/ more than 3 junctions
#32
rcastelo
closed
10 months ago
1
When I use the readGAlignments .
#31
wangguiqian
closed
1 year ago
2
Differences in reads' base content with IGV.
#30
sfragkoul
closed
1 year ago
2
Fix mapFromAlignments() related to issue #12
#29
gaoce
opened
1 year ago
1
Convert summarizeOverlaps.Rnw to summarizeOverlaps.Rmd
#28
Rohit-Satyam
opened
1 year ago
2
Permission for SweaveToRmd
#27
SunSummoner
opened
1 year ago
9
Addition of the strandMode parameter to readGAlignmentsList()
#26
rcastelo
closed
1 year ago
6
Support for strandMode in GAlignmentsList objects
#25
rcastelo
opened
1 year ago
9
Converting OverlapEncodings Rnw file to Rmd
#24
BerylKanali
opened
1 year ago
7
'cigar_buf' overflow ERROR when calling GenomicAlignments::cigarNarrow()
#23
daewoooo
closed
1 year ago
2
Convert WorkingWithAlignedNucleotides from Rnw to Rmd
#22
Chisomgold
closed
8 months ago
20
WIP WorkingWorkingWithAlignedNucleotides.Rnw to Rmd
#21
raoulkam
closed
1 year ago
1
WIP GenomicAlignmentsIntroduction.Rnw to Rmd
#20
raoulkam
closed
1 year ago
0
cigarNarrow_segmentationFault
#19
daewoooo
closed
2 years ago
3
BiocParallel errors
#18
gevro
closed
1 year ago
3
reference to query location
#17
gevro
closed
2 years ago
1
summarizeOverlap performance issues and crashes.
#16
mgperry
closed
3 years ago
7
install error
#15
shiyi-pan
closed
2 years ago
1
S4Vectors
#14
jiangweixia
closed
2 years ago
1
Implementation of queryLoc2refLoc() function
#13
caspargross
closed
4 years ago
2
mapFromAlignments() and soft-clipping
#12
hpages
opened
4 years ago
6
readGAlignmentPairs causes Floating point exception (core dumped)
#11
jayoung
closed
4 years ago
21
fail on r-devel
#10
alkodsi
closed
4 years ago
4
add length test to Fix #8
#9
c-mertes
closed
5 years ago
0
summarizeJunctions with genome fails if no junction exists
#8
c-mertes
closed
5 years ago
1
Clarify Strandedness Options for SummarizeOverlaps in Documentation
#7
groverj3
opened
5 years ago
1
Clarify Counting of Query-Spanning Reads in Documentation
#6
DarioS
opened
5 years ago
0
Non-graceful, when trying to access metadata column from GAlignment object
#5
FelixErnst
closed
5 years ago
1
Performance of readGAlignmentPairs with inter-chromosomal pairs
#4
LTLA
opened
5 years ago
0
Error using granges with unused argument on.discordant.seqnames
#3
sda910722
opened
6 years ago
1
incomplete use of bamRanges() for summarizeOverlaps method for BamViews
#2
alexg9010
closed
6 years ago
0
Strand-related warning in summarizeOverlaps() persists in some cases
#1
hpages
closed
6 years ago
2