Bioconductor HDF5Array issues

Bioconductor / HDF5Array

HDF5 backend for DelayedArray objects

https://bioconductor.org/packages/HDF5Array

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issues

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Error in saveHDF5SummarizedExperiment

#62 fernandafranca opened 4 months ago
2
`H5SparseMatrix` coercion to `dgCmatrix` discards NAs

#61 LTLA opened 7 months ago
0
installation of package ‘HDF5Array’ had non-zero exit status

#60 mick42-star closed 7 months ago
14
Add support for seurat hdf5 format.

#59 yduanBioinfo opened 8 months ago
1
Release 3 16

#58 yduanBioinfo closed 8 months ago
2
Add support for h5seurat object.

#57 yduanBioinfo closed 10 months ago
2
Interpreting `NATIVE_UINT8` as integer in sparse matrices

#56 LTLA opened 12 months ago
3
Error with `read_block()` when using `writeHDF5Array()`

#55 frederikziebell closed 1 year ago
4
Expose dimension and format options for the H5SparseMatrixSeed constructor

#54 LTLA closed 1 year ago
3
Problem installing HDF5Array on R 4.3.0

#53 AndreaRP closed 9 months ago
2
HDF5Array installation issue

#52 ytakemon closed 1 year ago
3
Object '.replace_dir' not found

#51 BBBBunnyZ closed 9 months ago
2
Feature Request: Support for writing sparse matrices to H5AD files

#50 mojaveazure opened 1 year ago
7
use TENxMatrix hasn't feature name

#49 Liripo closed 2 years ago
3
Coerce non-integer shapes into integers in the `H5SparseMatrix` constructor

#48 LTLA closed 2 years ago
2
Cannot read 10X h5

#47 ekernf01 closed 2 years ago
3
`superclass "DataTable_OR_NULL" not defined` error

#46 ekernf01 closed 2 years ago
3
Direct converters from H5SparseMatrixSeed-containing DelayedMatrix to dgCMatrix

#45 LTLA opened 2 years ago
0
Loss of sparsity when diving by vector

#44 const-ae closed 3 years ago
2
Warning: no function found corresponding to methods exports from 'HDF5Array' for: 'write_sparse_block'

#43 DustinSokolowski closed 3 years ago
2
Generalizing the H5SparseMatrixSeed class to support other data locations

#42 LTLA closed 1 year ago
4
How to create a huge on-disk array directly from R

#41 kokitsuyuzaki closed 3 years ago
4
H5ADMatrix objects looking up the wrong names

#40 LTLA closed 3 years ago
7
export utility functions and add documentation page

#39 LiNk-NY closed 3 years ago
3
exporting useful internal helper functions

#38 LiNk-NY closed 3 years ago
1
H5ADMatrix block processing fails because of the dimnames

#37 LTLA closed 3 years ago
1
Dual matrix seeds for efficient row/column accesses

#36 LTLA closed 3 years ago
7
Can't install HDF5Array_1.19.3 in R 4.1.0

#35 dpelegri closed 3 years ago
4
Extending TENxMatrix to work on variants of HDF5-backed storage

#34 LTLA closed 3 years ago
16
Treating dense HDF5Matrices as sparse for greater efficiency

#33 LTLA closed 3 years ago
8
filepath in HDF5ArraySeed's validity method be extracted with path()?

#32 LTLA opened 3 years ago
1
reset_h5_location operation?

#31 vjcitn closed 3 years ago
12
write_block fails for SparseArraySeed

#30 LTLA closed 4 years ago
1
[Windows-only] Error realizing matrix with dimnames to HDF5Matrix

#29 PeteHaitch closed 4 years ago
5
Logical NA converted to FALSE (devel-only) and character NA causing error (devel and release) when constructing HDF5Array

#28 PeteHaitch closed 4 years ago
14
Coercion of large HDF5Matrix to SparseArraySeed fails

#27 LTLA closed 4 years ago
7
taking a single row from a TENxMatrix object is extremely slow

#26 ccshao closed 4 years ago
4
'type' related error persists with 1yo HDF5SummarizedExperiment

#25 vjcitn closed 4 years ago
1
Long colnames get truncated

#24 FelixTheStudent closed 4 years ago
3
Storing raw-Rle with RleArray on a HDF5Array backend

#23 rcastelo closed 4 years ago
7
Added the maxdim argument

#22 muschellij2 closed 3 years ago
1
Install eror

#21 kvshams closed 4 years ago
4
The filepath arg of the HDFArray() and TENxMatrix() constructors should accept a Hub ID

#20 hpages opened 4 years ago
0
Migrating code to allow beachmat to read HDF5Matrix objects

#19 LTLA closed 3 years ago
1
HDF5Matrix subsetting loads subset into memory

#18 avalcarcel9 closed 4 years ago
4
Support for contiguous layout HDF5

#17 soulj closed 4 years ago
3
Reshape array to Matrix without reading in

#16 muschellij2 closed 3 years ago
1
Migrating beachmat's HDF5-related code to HDF5Array

#15 LTLA closed 3 years ago
11
Is it possible to connect to a HDF5 file in a read-only manner?

#14 phaverty closed 5 years ago
2
Can HDF5Array persist the dimnames too?

#13 phaverty closed 4 years ago
3