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LoomExperiment
A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/
https://www.bioconductor.org/packages/LoomExperiment
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How can I add rowname to the matrix?
#15
zh-zhang1984
closed
3 years ago
5
zero-length inputs cannot be mixed with those of non-zero length
#14
ccshao
opened
4 years ago
4
`import()` sometimes? fails
#13
mtmorgan
closed
4 years ago
1
bug fix: reference rowname when not NULL
#12
LiNk-NY
closed
4 years ago
1
Fixes to export and import consistency, closes #10
#11
LiNk-NY
closed
4 years ago
1
colData class and reducedDim dimnames don't survive roundtrip
#10
alexvpickering
closed
4 years ago
2
Difference in handling dense and sparse matrix when exporting
#9
nh3
closed
4 years ago
2
Add `LOOM_SPEC_VERSION` attribute to exported files
#8
nsoranzo
closed
5 years ago
1
`col_graphs` and `row_graphs` are mandatory
#7
nsoranzo
closed
5 years ago
2
First assay name doesn't survive round trip
#6
nsoranzo
closed
5 years ago
4
loompy can't read exported SingleCellLoomExperiment
#5
lazappi
closed
5 years ago
2
index issue when reading graphs from loom
#4
nh3
closed
5 years ago
2
rowData doesn't survive round trip
#3
lazappi
closed
5 years ago
6
Is sparse matrix supported for exporting to loom file?
#2
nh3
closed
5 years ago
2
generalization
#1
lawremi
closed
6 years ago
1