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Bioconductor
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VariantAnnotation
Annotation of Genetic Variants
https://bioconductor.org/packages/VariantAnnotation
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API to change output suffix to .gz
#35
d-cameron
opened
4 years ago
7
ScanVcfParam which Parameter Description Inconsistency
#34
DarioS
opened
4 years ago
2
indexVcf Fails if VCF File Not Compressed
#33
DarioS
closed
4 years ago
1
Import Error for bcftools Compressed Files
#32
DarioS
opened
4 years ago
1
Ambiguous Description of Ellipsis for readVcf
#31
DarioS
opened
4 years ago
0
Unable to Export VCF After rbind
#30
DarioS
opened
5 years ago
0
scanVcf not working with a connection and streaming
#29
SebastianHollizeck
closed
5 years ago
9
Can I read in a VCF "file" as a character string?
#28
tcashby
opened
5 years ago
1
Problems in parsing VCF fields containing multiple entries separated by commas (example with Mutect and Freebayes)
#27
annaquaglieri16
closed
5 years ago
7
writeVcf: Error in recycleSingleBracketReplacementValue
#26
lima1
closed
5 years ago
1
Error in VCF parsing with VariantAnnotation
#25
octopusCat88
closed
5 years ago
3
Create protein sequences including variants from a VCF file
#24
baderd
opened
5 years ago
3
How to output all records in INFO fild ?
#23
qindan2008
closed
5 years ago
3
scanBcfHeader _hts_rewind() error in 1.29.19
#22
smgogarten
closed
5 years ago
1
expand: expand any variables with Number set to 'R' into REF/ALT (new version)
#21
lcougnaud
closed
5 years ago
1
Presentation of missing ALT alleles
#20
vobencha
closed
5 years ago
6
Not all VCF records loaded.
#19
d-cameron
closed
5 years ago
8
rewriting the `vcfFields,character` to have remote VCF filepath work
#18
Liubuntu
closed
5 years ago
1
expand: expand any variables with Number set to 'R' into REF/ALT
#17
lcougnaud
closed
5 years ago
4
writeVcf error with latest version 1.28.2
#16
lima1
closed
5 years ago
1
writeVcf save invalid vcf with metadata out of order
#15
apastore
closed
5 years ago
6
update vcfFields() values for empty input
#14
Liubuntu
closed
5 years ago
6
updated the returned values for vcfFields()
#13
Liubuntu
closed
5 years ago
3
moved vcfFields() from 'SimpleList()' into 'CharacterList()'
#12
Liubuntu
closed
5 years ago
4
Added vcfFields,VcfFile-method.
#11
Liubuntu
closed
5 years ago
7
suppressing 'select()' returned 1:1 mapping
#10
ChristofferFlensburg
closed
5 years ago
2
add a GENO field
#9
tdelhomme
closed
5 years ago
3
Left-pointing breakend ALT variants get truncated because the allele starts with '.'
#8
d-cameron
closed
5 years ago
5
Added support for single breakend notation
#7
d-cameron
closed
6 years ago
1
REF ALT QUAL FILTER fields can no longer be modified via rowRanges()
#6
d-cameron
closed
6 years ago
7
Filtering VCF by ranges
#5
lawremi
opened
6 years ago
0
readVcfAsVRanges (Number = A)
#4
sigven
closed
6 years ago
6
merging VCF objects
#3
lawremi
opened
6 years ago
9
CollapsedVRanges?
#2
hubentu
closed
5 years ago
11
Unlisted Requirement fails on CentOS 7.4 w MariaDB
#1
lachlansimpson
closed
6 years ago
1
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