BioinformaticsRepos CategoryCompare-WebApp-Application issues

BioinformaticsRepos / CategoryCompare-WebApp-Application

The web-based version of CategoryCompare.

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issues

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Make the text-based/file-based gene list inputs mutually-exclusive

#30 dneelyep opened 8 years ago
1
Don't require users to enter the app's port when accessing the site.

#29 dneelyep closed 8 years ago
1
Set up a logical URL for the web app

#28 dneelyep opened 8 years ago
0
Host the application on a publicly-visible web server

#27 dneelyep closed 8 years ago
2
Switch from using CategoryCompare to CategoryCompare2

#26 dneelyep opened 8 years ago
0
Make the output graph exportable to other graph-manipulation applications.

#25 dneelyep opened 9 years ago
0
Make the exported PNG's color scheme match the generated graph's color scheme

#24 dneelyep closed 8 years ago
1
Make the background/edge color of the output graph user-customizable

#23 dneelyep closed 8 years ago
1
Make the background color white, and the edge color dark-ish grey.

#22 dneelyep closed 8 years ago
1
Selecting one or more nodes should cause metadata for those nodes to be displayed.

#21 dneelyep opened 9 years ago
1
The output graph should display a legend, mapping the color of nodes to their gene list label.

#20 dneelyep opened 9 years ago
0
All node color data from CategoryCompare has a value of "NA".

#19 dneelyep closed 8 years ago
1
The organism type libraries should be loaded when the R server starts, rather than each time an analysis is run.

#18 dneelyep closed 9 years ago
3
Users shouldn't be allowed to scroll the output graph out of view.

#17 dneelyep closed 9 years ago
2
Make the node font color not be the same as the background color.

#16 dneelyep closed 9 years ago
1
Significance value should be a slider from 0.0 to 1.0, rather than free-text input.

#15 dneelyep opened 9 years ago
1
Services related to the web app should be set up as daemons

#14 dneelyep opened 9 years ago
1
Display the GO term name rather than the GO ID in the CC output graph.

#13 dneelyep closed 9 years ago
1
Diff.-expressed gene lists should have labels.

#12 dneelyep opened 9 years ago
0
Rename the "All possible genes" label to "Gene Universe"

#11 dneelyep closed 9 years ago
1
Make it more obvious what the "significance value" is referring to.

#10 dneelyep opened 9 years ago
0
The R server should require authentication to be connected to.

#9 dneelyep opened 9 years ago
1
Add the ability to import gene lists from a file, rather than entering space-delimited values.

#8 dneelyep closed 9 years ago
1
The Rserve instance should pre-load all relevant libraries.

#7 dneelyep closed 9 years ago
1
Show the status of the CategoryCompare process while it's running.

#6 dneelyep opened 9 years ago
0
Program should fail gracefully if any of the node_data, edge_data, etc data structures are empty/null.

#5 dneelyep opened 9 years ago
0
Gene universes should be determined by the selected organism type.

#4 dneelyep opened 9 years ago
0
Organism types should be displayed in a human-friendly format.

#3 dneelyep closed 9 years ago
1
Application should be publicly-visible, so that people can use it.

#2 dneelyep closed 8 years ago
1
The UI should clearly distinguish between the gene list for the gene universe and the differentially expressed gene list.

#1 dneelyep closed 9 years ago
2