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Bioprotocols
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container-ontology
Container ontology for use with PAML (Protocol Activity Markup Language)
Apache License 2.0
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WIP: new implementation of the labware ontology based on owlready2 / EMMOntopy
#40
markdoerr
opened
1 year ago
0
Create LICENSE.md
#39
photocyte
closed
2 years ago
4
License?
#38
photocyte
closed
2 years ago
1
Possible path to integration with relational databases
#37
rpgoldman
opened
2 years ago
0
explain the context attribute
#36
jamesscottbrown
opened
2 years ago
4
fix link to Owlery API docs
#35
jamesscottbrown
closed
2 years ago
3
Update to use owlery-client library from PyPi.
#34
rpgoldman
opened
2 years ago
0
Container vs labware?
#33
photocyte
opened
2 years ago
10
Add GitHub action tests
#32
rpgoldman
opened
2 years ago
0
Query formulator for the container server
#31
rpgoldman
opened
2 years ago
0
Graphical presentation of the container ontology
#30
rpgoldman
opened
2 years ago
0
Add entries for OpenTrons catalog items
#29
rpgoldman
opened
2 years ago
2
Add representation of compatibility with some PAML actions
#28
rpgoldman
opened
2 years ago
2
Generate documentation from container_api using Sphinx
#27
rpgoldman
opened
2 years ago
0
Need a way to specify container volume
#26
bbartley
opened
2 years ago
2
Get owlery-client from git repo.
#23
rpgoldman
closed
2 years ago
0
[bug] Python API Install Instructions
#22
tsdobbs
closed
2 years ago
11
Pull OWLERY_CLIENT out of container ontology
#21
rpgoldman
closed
2 years ago
0
[doc] Version dependency - Python 3.9
#20
tsdobbs
closed
2 years ago
4
Is it possible to query a local working copy of the ontology?
#17
bbartley
closed
2 years ago
1
Add license file
#16
rpgoldman
opened
2 years ago
5
Is it possible to query for a general container specification given a particular container instance?
#15
bbartley
closed
2 years ago
3
Title image with icon from Noun Project
#14
rpgoldman
closed
2 years ago
0
Create a pip package
#13
bbartley
opened
2 years ago
0
Client API for container ontology server.
#12
rpgoldman
closed
2 years ago
0
Use a less cumbersome temporary IRI prefix.
#11
rpgoldman
closed
2 years ago
0
Extensive restructuring of container ontology.
#10
rpgoldman
closed
2 years ago
0
Add an Owlery server
#9
rpgoldman
closed
3 years ago
1
Replace poor ontology IRIs.
#8
rpgoldman
closed
3 years ago
0
Add better temporary "parking" IRIs for the ontology
#7
rpgoldman
closed
3 years ago
1
Add jupyter notebook showing use of the ontology from Python
#6
rpgoldman
opened
3 years ago
0
Review and clean up the use of height properties
#5
rpgoldman
opened
3 years ago
0
Extract opacity/clear from Strateos catalog
#4
rpgoldman
closed
2 years ago
1
Extract well bottom shape from Strateos catalog
#3
rpgoldman
closed
2 years ago
1
Identify requirements for well layout
#2
rpgoldman
opened
3 years ago
3
Canonical measurements for container dimensions
#1
rpgoldman
opened
3 years ago
18