correlationAnalyzeR-ShinyApp

A web application interface for the correlationAnalyzeR R package written in Shiny.

Local installation instructions

To set up a local shiny server do the following:

1. Clone the repo

git clone https://github.com/Bishop-Laboratory/correlationAnalyzeR-ShinyApp.git
cd correlationAnalyzeR-ShinyApp/

2. Install R v4.2.0 session and get the renv package

R -e 'if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv")'

3. Install getSysReqs

R -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")'
R -e 'remotes::install_github("mdneuzerling/getsysreqs", force=TRUE)'

4. Install system reqs (requires sudo)

REQS=$(Rscript -e 'options(warn = -1); cat(getsysreqs::get_sysreqs("renv.lock"))' | sed s/"WARNING: ignoring environment value of R_HOME"//) \
  && echo $REQS \
  && sudo apt-get install -y $REQS

5. Optional: You may need cmake > v3.15 to build nlopt. If so, follow these instructions to get the latest cmake: link

6. Restore the R environment to build all dependencies

R -e "renv::restore()"

7. Run the server

Rscript app.R