BlueBrain voxcell issues

BlueBrain / voxcell

Tools to work with voxel based brain atlases.

Apache License 2.0

5 stars 3 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Fix save_nrrd

#38 arnaudon opened 4 days ago
3
pynrrd1.0

#37 arnaudon opened 5 days ago
2
Allow to specify index_offset in CellCollection.as_dataframe() and from_dataframe()

#36 GianlucaFicarelli closed 6 days ago
0
Versions of numpy starting in 2.X will fail due to bool8 data-type being removed

#35 ssssarah closed 4 days ago
4
Allow to provide the filename of the brain annotation volume

#34 lecriste opened 3 months ago
5
Add the VoxelData.value_to_indices() method

#33 adrien-berchet closed 7 months ago
2
Add RegionMap.from_dataframe() and RegionMap.as_dict() methods

#32 adrien-berchet closed 7 months ago
5
Add unravel method to ValueToIndexVoxels

#31 eleftherioszisis closed 7 months ago
1
Add ValueToIndexVoxels to simplify using indices instead of masks

#30 mgeplf closed 7 months ago
1
remove pkg_resources, use importlib; update github actions

#28 mgeplf closed 9 months ago
1
Fix warnings

#27 eleftherioszisis closed 1 year ago
1
Hierarchy grouper v2

#26 GianlucaFicarelli opened 1 year ago
1
Update read the docs

#25 mgeplf closed 1 year ago
1
update ci

#24 mgeplf closed 1 year ago
1
Add region_map.get_common_node_groups to help group nodes with the sa…

#23 mgeplf opened 1 year ago
2
Add support for "Alternate Views" in RegionMap

#22 mgeplf opened 1 year ago
0
upgrade to pandas 2.0 groupby

#21 edasubert closed 1 year ago
2
error-in-out-of-bounds-lookup-with-non-scalar-voxeldata

#20 edasubert closed 1 year ago
1
Error in out-of-bounds lookup with non-scalar VoxelData

#19 seirios closed 1 year ago
9
Add VoxelData subclasses

#18 mgeplf closed 1 year ago
1
Switch hemisphere constants to be in line with AIBS

#17 mgeplf closed 1 year ago
0
Ensure bbox is correct for negative voxel dimensions

#16 eleftherioszisis closed 1 year ago
1
add children_count to region_map.as_dataframe()

#15 mgeplf closed 1 year ago
0
Harvest the categorical power in `CellCollection.save_sonata`

#14 eleftherioszisis closed 1 year ago
0
Regions

#13 dkeller9 closed 1 year ago
2
Citation section and badge added

#12 alex4200 closed 2 years ago
1
Add a function to compute the spatial intersection of a segment with a VoxelData object

#11 adrien-berchet closed 2 years ago
3
Allow usage of pathlib.Path in VoxelData.save_nrrd

#10 eleftherioszisis closed 2 years ago
1
Update README.rst

#9 alex4200 closed 2 years ago
0
more example

#8 mgeplf closed 2 years ago
0
added examples, cleaned up BBP-isms in documentation

#7 mgeplf closed 2 years ago
0
Create a pandas dataframe from an region_map hierarchy

#6 mgeplf closed 2 years ago
1
Add a function to compute the spatial intersection of a segment with a VoxelData object

#5 adrien-berchet closed 2 years ago
12
remove some of the pylint exceptions, fix the resulting style errors

#4 mgeplf closed 2 years ago
1
fix auto number conversion in github actions

#3 mgeplf closed 2 years ago
0
Teach CellCollection about multiple node populations in sonata

#2 mgeplf closed 2 years ago
1

BlueBrain / voxcell

issues

Fix save_nrrd

pynrrd1.0

Allow to specify index_offset in CellCollection.as_dataframe() and from_dataframe()

Versions of numpy starting in 2.X will fail due to bool8 data-type being removed

Allow to provide the filename of the brain annotation volume

Add the VoxelData.value_to_indices() method

Add RegionMap.from_dataframe() and RegionMap.as_dict() methods

Add unravel method to ValueToIndexVoxels

Add ValueToIndexVoxels to simplify using indices instead of masks

Updating copyright year 2024

remove pkg_resources, use importlib; update github actions

Fix warnings

Hierarchy grouper v2

Update read the docs

update ci

Add region_map.get_common_node_groups to help group nodes with the sa…

Add support for "Alternate Views" in RegionMap

upgrade to pandas 2.0 groupby

error-in-out-of-bounds-lookup-with-non-scalar-voxeldata

Error in out-of-bounds lookup with non-scalar VoxelData

Add VoxelData subclasses

Switch hemisphere constants to be in line with AIBS

Ensure bbox is correct for negative voxel dimensions

add children_count to region_map.as_dataframe()

Harvest the categorical power in `CellCollection.save_sonata`

Regions

Citation section and badge added

Add a function to compute the spatial intersection of a segment with a VoxelData object

Allow usage of pathlib.Path in VoxelData.save_nrrd

Update README.rst

more example

added examples, cleaned up BBP-isms in documentation

Create a pandas dataframe from an region_map hierarchy

Add a function to compute the spatial intersection of a segment with a VoxelData object

remove some of the pylint exceptions, fix the resulting style errors

fix auto number conversion in github actions

Teach CellCollection about multiple node populations in sonata

Updating copyright year 2022