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BoPeng
/
simuPOP
A general-purpose forward-time population genetics simulation environment.
http://bopeng.github.io/simuPOP/
GNU General Public License v2.0
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Inbreeding in simuPOP
#72
BoPeng
closed
2 years ago
1
Stop embedding boost
#71
BoPeng
closed
5 years ago
0
No access of members of vector<boo>::iterator with new libc++
#70
BoPeng
closed
5 years ago
1
Fix travis tests.
#69
BoPeng
closed
2 years ago
2
vary fecundity by age
#68
khornick1
closed
5 years ago
11
Simulating two loci
#67
EricFriedlander
closed
5 years ago
3
No release or tagged versions in Github
#66
madsenwattiq
closed
5 years ago
2
Simulate a declining population that has two VSPs
#65
evanwcarson
closed
5 years ago
4
syntax error: simuPOP import
#64
dinhe878
closed
5 years ago
2
Questions about Temporal effective population size
#63
MrLocuace
closed
5 years ago
2
Begin lineage with loaded population of different alleleType.
#62
MrLocuace
closed
5 years ago
7
Monogamous mating without fixed offspring number
#61
MrLocuace
closed
5 years ago
2
Evolve previously generated genotypes under OutOfAfricaModel
#60
MrLocuace
closed
5 years ago
7
Virtual subpopulations following OutOfAfrica model?
#59
MrLocuace
closed
5 years ago
19
get subPop index or name from individual reference
#58
nclowell
closed
6 years ago
3
The kernel appears to have died. It will restart automatically.
#57
Hadron74
closed
5 years ago
4
simuPOP conda installation
#56
EricFriedlander
closed
6 years ago
2
Virtual subpopulations not recognized when evolving age-structured population with overlapping generations
#55
gabelow
closed
6 years ago
3
Simulating several genes in one chromosome
#54
MrLocuace
closed
6 years ago
2
python parentchooser_ lighter version
#53
BoPeng
closed
5 years ago
3
simuPOP is not compatible with python 3.6
#52
bioinfornatics
closed
6 years ago
4
self-incompatibility mating scheme: (set)Genotypes, subPops, VSP, alleleNames, etc.?
#51
avabelieve
closed
6 years ago
11
simuOpt.Params - deprecated but alternative?
#50
avabelieve
closed
6 years ago
1
Rounded position when exporting to MS format
#49
BoPeng
closed
6 years ago
1
Calculating and saving average heterozygosity for each generation
#48
SMartinOSU
closed
6 years ago
3
Striving for best practices when simulating harvesting
#47
ChrystelleDelord
closed
6 years ago
3
How works gen/step with pop.evolve ?
#46
dbailleul
closed
6 years ago
2
Is it possible to suppress output from a `CSVExporter`?
#45
ashander
closed
6 years ago
2
Migration operator
#44
dbailleul
closed
6 years ago
4
How to create new loci in an existing population?
#43
ashander
closed
6 years ago
2
change weights in heteroMating within each generation
#42
janavanhu
closed
6 years ago
3
Non-informative error messages re memory demands
#41
ashander
closed
6 years ago
2
mutation rate
#40
Amelia-uoft
closed
6 years ago
6
Filter Monomorphic Sites
#39
snunzi
closed
7 years ago
3
Using pedigrees with overlapping generations
#38
regevs
closed
6 years ago
2
With more than 500 loci, recombinations occur past the last locus
#37
petrelharp
closed
7 years ago
10
Variable Age at First Breeding
#36
snunzi
closed
7 years ago
8
Handle cases where no males/females exist in a *virtual* subpopulation?
#35
ashander
closed
2 years ago
35
Tracking birth experience
#34
ghost
closed
7 years ago
5
Honor or warn about unused parameter subPops of standalone HomoMating scheme
#33
BoPeng
closed
9 months ago
3
Can ordering of parents chosen by SequentialParentsChooser be changed?
#32
ashander
closed
7 years ago
2
Faster alternative to `DiscardIf` to reduce calls to RNG?
#31
ashander
closed
7 years ago
12
Showing subPop membership of individuals in a pedigree
#30
rogerdoyle
closed
7 years ago
6
How to show generation of every individual in a simulation
#29
rogerdoyle
closed
7 years ago
2
Segmentation fault when providing a non-existent VSP index
#28
ashander
closed
7 years ago
1
simuPOP doc conversion process
#27
BoPeng
closed
5 years ago
6
How to obtain HomoMating within a set of virtual subpopulations
#26
ashander
closed
7 years ago
8
Indices for mating schemes? (and advice for debugging within mating schemes)
#25
ashander
closed
7 years ago
5
Problem with pedigree.py for srv simulator
#24
BoPeng
closed
7 years ago
8
Timeline to 1.1.8 release?
#23
ashander
closed
7 years ago
6
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