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BoutrosLaboratory
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bamql
Query language for filtering SAM/BAM reads
http://labs.oicr.on.ca/boutros-lab/software/BAMQL
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configure forces -c++11 but bamql-1.6 and 1.6.1 evidently require -c++14
#26
mmokrejs
closed
3 weeks ago
1
Use shared llvm libs instead of static libs
#25
mmokrejs
closed
3 weeks ago
0
compiler/predicates.cpp:65:15: error: 'log' was not declared in this scope; did you mean 'llvm::Intrinsic::log'?
#24
mmokrejs
closed
3 weeks ago
2
building bamql under archlinux : "Cannot determine UUID library calls."
#23
kbipinkumar
closed
3 weeks ago
2
I can't install bamql from repository ppa:boutroslab/ppa
#22
arturomarin
closed
1 year ago
1
bamql does not run after compiling it
#21
arturomarin
closed
3 weeks ago
2
Would it be possible binaries and / or to include this program in the bioconda repository?
#20
arturomarin
closed
1 year ago
1
Install error
#19
NaokiTakata11
closed
1 year ago
0
Filtering by read start positions
#18
zxl124
closed
4 years ago
1
Getting the paired end read
#17
virenar
closed
5 years ago
2
Installation problems
#16
MPGiD
closed
5 years ago
1
static binaries
#15
KamilSJaron
closed
5 years ago
1
bamql requires static llvm libs
#14
mmokrejs
closed
5 years ago
48
llvm not found but present
#13
brobr
closed
6 years ago
6
Support query for RF, FR, FF, RR orientations and outer insert-sizes
#12
mmokrejs
closed
6 years ago
19
Filter on SAM tags
#11
sjackman
closed
6 years ago
2
matching nucleotides from a fasta file
#10
PromitaBose
closed
1 year ago
1
Added benchmark test scripts
#9
PragashSiva
closed
8 years ago
1
Correctly used CIGAR strings in nt_exact position calculation
#8
PragashSiva
closed
8 years ago
6
Write unit tests
#7
apmasell
closed
9 years ago
0
Store query and accept/reject flag in header
#6
apmasell
closed
9 years ago
0
Add debugging symbols
#5
apmasell
closed
9 years ago
3
Make use of BAM indicies
#4
apmasell
closed
9 years ago
0
Add predicate to look at mapped sequence
#3
apmasell
closed
9 years ago
1
Run performance tests
#2
apmasell
closed
9 years ago
1
Global variables optimized out
#1
clalansingh
closed
9 years ago
0