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Breeding-Insight
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BIGapp
R Shiny app to perform the bioinformatics pipelines developed within Breeding Insight
https://breedinginsight.org/
Apache License 2.0
2
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Geno updates
#76
alex-sandercock
opened
2 weeks ago
0
Hackathon - BrAPI Integration for PCA
#75
HMS17
opened
3 weeks ago
0
Update the Dosage2VCF tab to be a more general file conversion to VCF tab
#74
alex-sandercock
opened
1 month ago
0
GWAS updates
#73
alex-sandercock
closed
1 month ago
0
Development
#72
alex-sandercock
closed
1 month ago
0
Organize GWAS tabs
#71
Cristianetaniguti
closed
1 month ago
0
Add QTL selection before Multiple QTL model in GWAS
#70
Cristianetaniguti
closed
1 month ago
0
Add user warning to Updog Dosage Calling tab
#69
alex-sandercock
closed
1 month ago
1
Ignore menu headings when minimizing sidebar
#68
alex-sandercock
closed
1 month ago
0
Updates to summary info and ui fixes
#67
alex-sandercock
closed
1 month ago
0
Update Read Depth slider to be a numerical input
#66
alex-sandercock
closed
1 month ago
0
If user submits ".vcf" as part of the output file name in the dosage calling tabs, then remove so there isn't a .vcf.vcf.gz file
#65
alex-sandercock
closed
1 month ago
0
version update and GWAS bug fix
#64
alex-sandercock
closed
1 month ago
0
Need to make the VCF file optional for GS if a user only relies on the A matrix
#63
Cristianetaniguti
closed
1 month ago
1
bugfix for graphics plots in Diversity tab
#62
Cristianetaniguti
closed
1 month ago
0
Merge main branch updates
#61
alex-sandercock
closed
1 month ago
0
Make PCA 3D colors always categorical
#60
Cristianetaniguti
closed
1 month ago
0
Check ploidy PCA tab
#59
Cristianetaniguti
closed
1 month ago
0
add markdown
#58
Cristianetaniguti
closed
1 month ago
0
Updated Dosage2VCF Tab to accept the collapsed_counts format
#57
alex-sandercock
closed
1 month ago
0
GWAS tab updates
#56
Cristianetaniguti
closed
1 month ago
0
Enhancements and Bug Fixes
#55
alex-sandercock
closed
1 month ago
0
Add f1 and s1 models to updog tab
#54
Cristianetaniguti
closed
1 month ago
1
Add boxes for input parent names for f1 and s1 updog models
#53
Cristianetaniguti
closed
1 month ago
0
GS review
#52
Cristianetaniguti
closed
1 month ago
0
Allow user to upload passport file to subset dosage calling samples
#51
alex-sandercock
closed
1 month ago
0
Add expansion button to shiny plot boxes
#50
alex-sandercock
closed
1 month ago
0
Allow the user to download analysis parameters
#49
alex-sandercock
closed
1 month ago
0
GS review and help material
#48
Cristianetaniguti
closed
1 month ago
1
GBLUP support added
#47
alex-sandercock
closed
1 month ago
0
Figure bug fixes
#46
alex-sandercock
closed
2 months ago
0
Development
#45
alex-sandercock
closed
2 months ago
0
Update the "Information" buttons in each tab
#44
Cristianetaniguti
opened
2 months ago
0
Update "Help" information
#43
Cristianetaniguti
opened
2 months ago
0
Remove AF from Summary Metrics and remove input selection for dosage count
#42
alex-sandercock
closed
2 months ago
0
Change "Prediction Accuracy" in GS to "Predictive Ability"
#41
alex-sandercock
closed
2 months ago
0
Add GBLUP support in the GS tabs
#40
alex-sandercock
closed
1 month ago
0
Conditional tabs in filtering tab
#39
Cristianetaniguti
closed
2 months ago
2
Add dashed lines description to graphics in Filtering tab
#38
Cristianetaniguti
closed
2 months ago
1
Add control messages for Filtering tab when updog info is not available
#37
Cristianetaniguti
closed
2 months ago
1
Add LD plot from GWASpoly
#36
Cristianetaniguti
closed
1 month ago
0
Bug fixes
#35
alex-sandercock
closed
2 months ago
0
DAPC Values not displaying in DAPC tab
#34
alex-sandercock
closed
2 months ago
0
DAPC Values not displaying in DAPC tab
#33
alex-sandercock
closed
2 months ago
0
Add checks for genotype file uploads
#32
Cristianetaniguti
opened
2 months ago
1
update
#31
Cristianetaniguti
closed
2 months ago
0
Update README
#30
Cristianetaniguti
closed
2 months ago
1
GEBVs Table not displaying in GS Accuracy tab
#29
alex-sandercock
closed
2 months ago
0
Added link to BIGapp Tutorial
#28
alex-sandercock
closed
3 months ago
0
Merge README changes from main
#27
alex-sandercock
closed
3 months ago
0
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