issues
search
BrendelGroup
/
xGDBvm
Code for the xGDBvm iPlant Atmosphere enabled genome annotation platform
http://brendelgroup.github.io/xGDBvm/
GNU General Public License v3.0
0
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Tutorial page is not responding
#41
ssri28
opened
5 years ago
0
correct paper link
#40
vpbrendel
closed
7 years ago
1
updated reference
#39
vpbrendel
closed
8 years ago
0
updated to include code that specifies persistent notifications
#38
jduvick
closed
8 years ago
0
fixed bug in the 'copy file' function that is designed to allow HPC output file to …
#37
jduvick
closed
8 years ago
0
Updates to video tutorial links and associated code; acknowledgments
#36
jduvick
closed
8 years ago
0
updated README.md for Volvox case study
#35
vpbrendel
closed
8 years ago
0
'Smart' parsing of input GFF3 files so that IDs match the annotation FASTA files.
#34
jduvick
opened
8 years ago
1
Updates to files involved in displaying GDB log files; updated instructions
#33
jduvick
closed
8 years ago
2
GeneMark key doesn't copy correctly.
#32
standage
opened
8 years ago
1
various updates, including critical GFF_to_XGDB_Standard.pl bug fixes
#31
vpbrendel
closed
8 years ago
0
README / webpage links
#30
standage
closed
8 years ago
0
updates to Stepwise Instructions including links to Case Studies & ne…
#29
jduvick
closed
8 years ago
0
Updates to correct html rendering flaws on various pages; resubmit loop for GTH
#28
jduvick
closed
8 years ago
0
Updated README...
#27
standage
closed
8 years ago
0
Dropdown menu displays 10th GDB incorrectly
#26
jduvick
closed
8 years ago
4
xGDB_Procedure.sh updates
#25
vpbrendel
closed
8 years ago
0
critical update to xGDB_Procedure.sh
#24
vpbrendel
closed
8 years ago
0
Polistes canadensis case study
#23
standage
closed
8 years ago
0
various updates that make use of multiple cores on a VM
#22
vpbrendel
closed
8 years ago
3
Fixed bug in copy_exec.php
#21
jduvick
closed
8 years ago
0
Restore 12 hr defaults for App ID values loaded on vm-configure
#20
jduvick
closed
8 years ago
0
Bug fixes including failure to parse N-mask in genomic input and new condition for remote job failure
#19
jduvick
closed
8 years ago
0
Code indentation
#18
standage
opened
8 years ago
2
Fixed issue with file extensions and CpGAT refrprot documentation
#17
standage
closed
8 years ago
2
N-masked sequence may be ignored, no track feature created
#16
jduvick
opened
8 years ago
0
fixed one last reference to outdated file 'SplitMakeArryGSQ.pl' and d…
#15
jduvick
closed
8 years ago
0
minor indentation edits to update-vm
#14
vpbrendel
closed
8 years ago
0
updates to mount-datastore, xGDB_Procedure.pl, SplitMakeArrayGSQ.pl
#13
vpbrendel
closed
8 years ago
1
Fix update-vm
#12
standage
closed
8 years ago
0
Various updates to improve VM configuration experience, update GUI instructions, and fix a bug that prevented GeneSeqer parameters from being correctly interpreted
#11
jduvick
closed
8 years ago
0
use of local CPU resources
#10
vpbrendel
opened
8 years ago
2
Fix update script to use the correct git remote label
#9
standage
closed
8 years ago
1
Root ownership of the code on iPlant/CyVerse images
#8
standage
closed
8 years ago
2
dos2unix on apps.php
#7
vpbrendel
closed
8 years ago
0
xGDBvm scripts can be fooled by false FAILED message from Agave
#6
jduvick
opened
8 years ago
0
Fixes related to archiving GDB; updates to help text related to recently changed input data path
#5
jduvick
closed
8 years ago
0
Fixed error in pipeline script that failed to print an error message …
#4
jduvick
closed
8 years ago
0
Corrected a pathname variable, updated 0README instructions, and updated permissions
#3
jduvick
closed
8 years ago
1
Updates to VM configuration scripts
#2
jduvick
closed
8 years ago
0
Streamline update process
#1
standage
closed
8 years ago
2