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BridgesLab / PredictorsDietInducedObesity

This repository contains code and manuscripts for a project in the lab relating to predicting the amount of diet induced obesity.
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PredictorsDietInducedObesity

This repository contains code and manuscripts for a project in the lab relating to predicting the amount of diet induced obesity.

This PredictorsDietInducedObesity data is made available under the Open Data Commons Attribution License: http://opendatacommons.org/licenses/by/1.0. For more information see the LICENSE.txt file in this directory.

<img alt="This material is Open Data" border="0" src="http://assets.okfn.org/images/ok_buttons/od_80x15_blue.png" />

DOI

Raw Data

All raw data is in the data/raw folder. This data is automatically obtained from our internal LIMS system and can only be updated from that point. The script files use this raw data to do the analysis. Data which has been processed is saved in the data/processed folder.

Script files

This code base includes the raw data and reproducible R code for these analyses within the scripts folder. All analysis file are R scripts as Rmarkdown (Rmd) files. These files can be run inside RStudio https://www.rstudio.com/ and will generate the md and html files which include the processed data. For more information on using R and using these files see http://cran.us.r-project.org/.

Publications

All posters, manuscripts or external presentations are in the publications folder. This includes revisions, and where possible reviewer comments and responses.

A preprint of the manuscript from this study is available on bioRxiv at http://dx.doi.org/10.1101/004283