CellminerCDB

CellMinerCDB is a Shiny/R app that simplifies access and exploration of cancer cell line pharmacogenomic data across different sources.

Quickstart

To run the app, run the following commands in R inside the project folder:

shiny::runApp()

Dependencies and Source Repositories

Dependencies Created by the NCI DTB Team

• rcellminer: https://github.com/CBIIT/rcellminer
• rcellminerData: https://github.com/CBIIT/rcellminerData
• rcellminerUtilsCDB: https://github.com/CBIIT/rcellminerUtilsCDB
• rcellminerElasticNet: https://github.com/CBIIT/rcellminerElasticNet
• geneSetPathwayAnalysis: https://github.com/CBIIT/geneSetPathwayAnalysis

Other Dependencies

• shiny
• d3heatmap
• jsonlite
• stringr
• glmnet
• ggplot2
• plotly
• foreach
• doSNOW
• parallel

Data packages

• sarcoma: FIXME
• nciSclcData: https://github.com/CBIIT/nciSclcData
• ccleData: TBA
• gdsc: TBA
• ctrpData: TBA
• nciAlmanac: TBA