CBeelen Phototransduction issues

CBeelen / Phototransduction

Code to reproduce the simulations and figures for manuscript "A hybrid stochastic/deterministic model of single photon response and light adaptation in mouse rods." by C. Beelen, S. Asteriti, L. Cangiano, K.-W. Koch and D. Dell'Orco

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stimulus and the number of photons

#4 978539023 opened 2 years ago
0
Sorry Doctor Beelen, another important question confuses me: Fig 3.7 in your dissertation. When set background 1860 photonsm2s

#3 978539023 closed 2 years ago
0
If I consider Ca2+ feedback on rhodopsin kinasein in HSDM. Is there any simple method in IQM tool? Because in every time point IQMsimulate returns a Ca2+ value, IQMstochsim2 returns a set of value about RK, RECT, RecR_Ca,RecR_Ca2+_RK, which will cost too large calculation and time.

#2 978539023 opened 2 years ago
1
How can I set stimulus in stochastic model? Because stimulus, background, preflash and so on can not be variables in IQMstochsim2 but they can in IQMsimulate.

#1 978539023 opened 2 years ago
3

CBeelen / Phototransduction

issues

stimulus and the number of photons

Sorry Doctor Beelen, another important question confuses me: Fig 3.7 in your dissertation. When set background 1860 photonsm2s

If I consider Ca2+ feedback on rhodopsin kinasein in HSDM. Is there any simple method in IQM tool? Because in every time point IQMsimulate returns a Ca2+ value, IQMstochsim2 returns a set of value about RK, RECT, RecR_Ca,RecR_Ca2+_RK, which will cost too large calculation and time.

How can I set stimulus in stochastic model? Because stimulus, background, preflash and so on can not be variables in IQMstochsim2 but they can in IQMsimulate.