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CCBR
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ASPEN
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets 🌲
https://ccbr.github.io/ASPEN/
MIT License
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docs: add zenodo doi & badge
#42
kelly-sovacool
closed
2 weeks ago
0
chore: 🤖 prepare release v1.0.2
#41
github-actions[bot]
closed
2 weeks ago
0
ci: use mkdocs/mike action
#40
kelly-sovacool
closed
2 weeks ago
0
refactor: use jobby & spooker from CCBR/Tools
#39
kelly-sovacool
closed
3 weeks ago
0
multiple versions for docs site
#38
kelly-sovacool
closed
2 weeks ago
0
fix: set singularity cachedir inside workdir
#37
kelly-sovacool
closed
2 weeks ago
2
V1.0.1 dev
#36
kopardev
closed
5 months ago
0
What to do if no MANIFEST
#35
kopardev
closed
5 months ago
0
Contrast file is "required"
#34
kopardev
closed
5 months ago
0
set default singularity cache directory to `$WORKDIR/.singularity`
#33
kelly-sovacool
closed
2 weeks ago
5
Check if jobby running correctly.
#32
kopardev
opened
7 months ago
0
Need to add single-end option
#31
slsevilla
closed
6 months ago
1
update citation file with Zenodo DOI after we cut the next release
#30
kelly-sovacool
closed
2 weeks ago
0
`runinfo.yaml` stat error
#29
kopardev
closed
5 months ago
0
chore: create PR template
#28
kelly-sovacool
closed
8 months ago
0
docs: create CITATION.cff
#27
kelly-sovacool
closed
8 months ago
1
chore: update pre-commit config files
#26
kelly-sovacool
closed
8 months ago
0
warning during `git clone`: large files should be handled with `git lfs`
#25
kelly-sovacool
opened
8 months ago
4
aggregate error in DiffATAC reported by Krithika
#24
kopardev
closed
8 months ago
1
Feature/diffatac
#23
kopardev
closed
10 months ago
0
Add hs1 or T2T support
#22
kopardev
closed
8 months ago
0
"consensus" peaks are generated even when samples have only 1 replicate
#21
kopardev
opened
10 months ago
0
adding basic GH actions
#20
kopardev
closed
11 months ago
0
Diff error
#19
kopardev
closed
10 months ago
0
Add mouse support for Diff ATAC
#18
kopardev
closed
8 months ago
2
add Counts Matrix to workflow
#17
slsevilla
closed
10 months ago
4
Change location of where the pipeline reads cluster.yaml
#16
slsevilla
closed
10 months ago
0
add contrast comparisons between peaks
#15
slsevilla
closed
10 months ago
5
jaccard time out; max out on CPUS
#14
slsevilla
closed
1 year ago
1
read access not given for v.0.6.1
#13
slsevilla
closed
1 year ago
1
fqscreen is required for multiqc
#12
kopardev
closed
1 year ago
0
Mmul10/BosTau9 support
#11
kopardev
closed
1 year ago
0
tmp
#10
slsevilla
closed
10 months ago
0
Check replicate names are unique
#9
slsevilla
closed
10 months ago
0
sample error with samples > 39
#8
slsevilla
closed
1 year ago
4
ASAP: Deeptools peaks
#7
kopardev
opened
1 year ago
0
Add code for fixed_width peak calling
#6
kopardev
closed
1 year ago
1
jaccard issue
#5
desireetillo
closed
2 years ago
1
Add Fastqscreen
#4
kopardev
closed
10 months ago
0
copy cluster.json to WORKDIR
#3
kopardev
closed
3 years ago
1
copy scripts folder
#2
kopardev
closed
3 years ago
1
Add dyanmic partition based off of buyinnodes
#1
kopardev
closed
3 years ago
1