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CCBR
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CHARLIE
Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs
https://ccbr.github.io/CHARLIE/
MIT License
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Release/0.9.0
#84
kopardev
closed
1 year ago
0
parallizing find_circ
#83
kopardev
closed
1 year ago
0
moved all required resources to /data/CCBR_Pipeliner
#82
kopardev
closed
1 year ago
0
function change_grp() to charlie
#81
kopardev
closed
1 year ago
0
move resources to common location
#80
kopardev
closed
1 year ago
1
change group to Ziegelbauer_lab before running
#79
kopardev
closed
1 year ago
1
Feature/issue75
#78
kopardev
closed
1 year ago
0
parallelize find_circ
#77
kopardev
closed
1 year ago
1
Feature/issue70
#76
kopardev
closed
1 year ago
0
add `--cluster-status` to snakemake command to handle timeout errors
#75
kopardev
closed
1 year ago
1
ERCC read counts missing from STAR GeneCount
#74
kopardev
closed
1 year ago
3
TopHat with CircExplorer
#73
kopardev
closed
1 year ago
2
Segemehl alignment with CircExplorer2
#72
kopardev
closed
1 year ago
5
BWA alignment with circExplorer
#71
kopardev
closed
1 year ago
4
add find_circ
#70
kopardev
closed
1 year ago
1
new plots
#69
kopardev
opened
1 year ago
0
Feature/issue65 being merge in
#68
kopardev
closed
1 year ago
0
Update issue65 with updates from issue55
#67
kopardev
closed
1 year ago
0
Feature/issue55
#66
kopardev
closed
1 year ago
0
run specific resource file
#65
kopardev
closed
1 year ago
1
3 major fixes needed with activeDev
#64
kopardev
closed
1 year ago
1
Retries
#63
kopardev
closed
1 year ago
1
Feature/issue57
#62
kopardev
closed
1 year ago
0
Feature/issue57
#61
kopardev
closed
1 year ago
1
test
#60
kopardev
closed
1 year ago
0
Update snakemake version
#59
kopardev
closed
1 year ago
1
create test data set
#58
kopardev
closed
1 year ago
1
Add circRNA_finder
#57
kopardev
closed
1 year ago
1
insert updated flowchart
#56
kopardev
closed
1 year ago
1
snakefmt all snakefiles
#55
kopardev
closed
1 year ago
2
DCC error: invalid literal for int() with base 10
#54
kopardev
closed
1 year ago
6
nclscan error:There are no main datasets assigned.
#53
kopardev
closed
1 year ago
3
create updated master counts table
#52
kopardev
closed
1 year ago
1
DCC: add the linear count column to count matrix
#51
kopardev
closed
1 year ago
1
Feature/issue46
#50
kopardev
closed
1 year ago
0
restart samples, except 1 and 2
#49
kopardev
closed
1 year ago
1
Footprint of NCLscan and MapSplice is too large
#48
kopardev
closed
1 year ago
1
estimate duplication error
#47
kopardev
closed
1 year ago
3
cirRNA DAQ updates
#46
kopardev
closed
1 year ago
4
New copy of NC_001806.2
#45
kopardev
closed
1 year ago
1
mapsplice failure
#44
kopardev
closed
1 year ago
5
DCC error
#43
kopardev
closed
1 year ago
2
Containerize major rules
#42
kopardev
closed
7 months ago
3
Active dev
#41
kopardev
closed
2 years ago
0
Try NCL_scan
#40
kopardev
closed
1 year ago
6
Try MapSplice
#39
kopardev
closed
2 years ago
8
Add MapSplice
#38
kopardev
closed
2 years ago
2
Try adding circall
#37
kopardev
closed
2 years ago
1
Try adding UROBORUS
#36
kopardev
closed
2 years ago
5
Try adding `circRNA_finder`
#35
kopardev
closed
1 year ago
5
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