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CCBR
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CRISPIN
CRISPR screen pipeline
https://ccbr.github.io/CRISPIN/
MIT License
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chore: 🤖 prepare release v1.0.1
#50
github-actions[bot]
closed
4 days ago
0
fix spooker call: parse workflow attributes outside groovy function
#49
kelly-sovacool
closed
4 days ago
0
python resources not added to path in ccbrpipeliner/7
#48
kelly-sovacool
closed
2 days ago
1
chore: bump changelog & version after release of v1.0.0
#47
github-actions[bot]
closed
3 weeks ago
0
redirect CRUISE website to CRISPIN
#46
kelly-sovacool
closed
3 weeks ago
1
set up docs site with mkdocs/mike
#45
kelly-sovacool
closed
1 month ago
0
Refactor samplesheet to handle multiple treatments & controls
#44
kelly-sovacool
opened
3 months ago
0
Rename the pipeline to CRISPIN
#43
kelly-sovacool
closed
5 months ago
0
document basic pipeline usage
#42
kelly-sovacool
opened
5 months ago
0
Refactor samplesheet based on CHAMPAGNE
#41
kelly-sovacool
opened
5 months ago
1
Consider renaming the pipeline to CRISPIN
#40
kelly-sovacool
closed
5 months ago
2
update citation file with Zenodo DOI after we cut the next release
#39
kelly-sovacool
closed
2 weeks ago
1
Update citation info
#38
kelly-sovacool
closed
9 months ago
0
Pipeline restarts even with resume flag at check_samplesheet
#37
slsevilla
opened
11 months ago
0
add VISPR to the pipeline
#36
slsevilla
opened
11 months ago
0
Update libraries to follow the sgRNA ID, the sequence, the gene
#35
slsevilla
opened
11 months ago
0
MAGeCK fails when counts matrix has an empty geneID
#34
slsevilla
opened
11 months ago
0
automatically pull col names to be analyzed with BAGEL
#33
slsevilla
opened
11 months ago
0
Print the recommended citation in bibtex format with `cruise --citation`.
#32
kelly-sovacool
closed
11 months ago
0
Allow for multiple pairwise comparisons, within one run
#31
slsevilla
opened
11 months ago
2
docs: prepare release v0.1.1
#30
kelly-sovacool
closed
11 months ago
0
Check validity of parameters at start of workflow
#29
kelly-sovacool
opened
11 months ago
0
Broken bold styling in website -- markdown inserted from README
#28
kelly-sovacool
opened
11 months ago
0
fix: include libraries in package data
#27
kelly-sovacool
closed
11 months ago
0
error finding library file in nf-TRIM_COUNT_MAGECK_COUNT
#26
slsevilla
closed
11 months ago
8
fix permissions issues on biowulf
#25
kelly-sovacool
closed
11 months ago
0
Permissions issues with check_samplesheet.py
#24
slsevilla
closed
11 months ago
6
404 error in README samplesheet link
#23
slsevilla
closed
11 months ago
0
chore: prepare to release v0.1.0
#22
kelly-sovacool
closed
1 year ago
0
Use cutadapt CCBR/nf-modules
#21
kelly-sovacool
closed
1 year ago
0
Add more libraries & document the param
#20
kelly-sovacool
closed
1 year ago
0
test: update stub config to make sure cruise init works
#19
kelly-sovacool
closed
1 year ago
0
Adding additional libraries
#18
wong-nw
closed
1 year ago
0
Document library param
#17
kelly-sovacool
closed
1 year ago
0
Update CLI
#16
kelly-sovacool
closed
1 year ago
0
Update CLI from CHAMPAGNE
#15
kelly-sovacool
closed
1 year ago
1
Use params for containers in process definitions
#14
kelly-sovacool
closed
1 year ago
0
test mageck mle w/ demo data
#13
kelly-sovacool
closed
1 year ago
1
Implement QC
#12
kelly-sovacool
opened
1 year ago
0
Bagel
#11
kelly-sovacool
closed
1 year ago
0
feat: drugZ
#10
kelly-sovacool
closed
1 year ago
0
feat: mageck count, test, & mle processes
#9
kelly-sovacool
closed
1 year ago
0
Optional process to download/update libraries
#8
kelly-sovacool
closed
1 year ago
1
ci: use CI to build cruise & run stubs
#7
kelly-sovacool
closed
1 year ago
0
Create subsampled test dataset that's small enough for GitHub
#6
kelly-sovacool
opened
1 year ago
0
Update docker container names for push to nciccbr
#5
kelly-sovacool
closed
1 year ago
0
Implement processes for drugz
#4
kelly-sovacool
closed
1 year ago
0
Implement processes for bagel
#3
kelly-sovacool
closed
1 year ago
0
Implement processes for mageck
#2
kelly-sovacool
closed
1 year ago
0
Create docker containers for bagel & drugz
#1
kelly-sovacool
closed
1 year ago
0
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