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CCBR
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MOSuite
MultiOmicsSuite: R package for downstream multi-omics analysis
https://ccbr.github.io/reneeTools/
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Build Workflow code - Normalize
#75
sync-by-unito[bot]
opened
3 days ago
0
Build Workflow code - Process Raw Data
#74
sync-by-unito[bot]
opened
3 days ago
0
Extract Template Code - Process Raw Data
#73
sync-by-unito[bot]
opened
3 days ago
1
Extract Template Code - Normalize
#72
sync-by-unito[bot]
opened
3 days ago
1
design: allow extra user-defined columns in sample metadata for flexible multifactor analyses
#71
kelly-sovacool
opened
2 weeks ago
0
add MOobject design diagram to README
#70
kelly-sovacool
opened
3 weeks ago
0
built-in function to retrieve metadata, genes, etc as one dataframe
#69
kelly-sovacool
opened
3 weeks ago
0
support different types of normalized counts
#68
kelly-sovacool
opened
3 weeks ago
0
discuss project name
#67
kelly-sovacool
closed
1 week ago
5
Iss 35
#66
kelly-sovacool
closed
1 month ago
0
use custom cpm function instead of edger
#65
kelly-sovacool
opened
2 months ago
0
allow users to specify multiple gene column names on dataset creation
#64
kelly-sovacool
opened
2 months ago
0
change count thresholds to be fractions instead of integers
#63
kelly-sovacool
opened
2 months ago
4
Clean Filter.R
#62
sync-by-unito[bot]
opened
2 months ago
1
Bulk RNAseq Labels
#61
sync-by-unito[bot]
closed
2 months ago
1
default color set within dataset
#60
kelly-sovacool
opened
3 months ago
0
Create development roadmap diagram
#59
kelly-sovacool
closed
3 months ago
1
high-level roadmap graphic
#58
kelly-sovacool
closed
3 months ago
1
ci: update codecov action from r-lib
#57
kelly-sovacool
closed
4 months ago
1
MVP vignette
#56
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - Clean Raw Counts
#55
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - DEG Gene List
#54
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - Venn Diagram
#53
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - Volcano Enhanced
#52
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - Volcano Summary
#51
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - DEG
#50
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - 3DPCA
#49
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - Heatmap
#48
kelly-sovacool
opened
4 months ago
0
Add NIDAP template - Batch Correction
#47
kelly-sovacool
closed
1 month ago
0
Add NIDAP template - Normalization
#46
kelly-sovacool
opened
4 months ago
0
reconcile gh-actions with NIDAP team
#45
kelly-sovacool
opened
4 months ago
0
handle `gene_id` and `GeneName` columns from RENEE
#44
kelly-sovacool
opened
4 months ago
0
Proof of concept: Rmd notebook w/ filter_counts
#42
kelly-sovacool
closed
1 week ago
0
filter_counts: write docs
#41
kelly-sovacool
closed
1 month ago
0
filter_counts: write unit tests
#40
kelly-sovacool
closed
1 month ago
1
filter_counts: refactor with S7 object
#39
kelly-sovacool
closed
1 month ago
0
Create function: filter_counts
#38
kelly-sovacool
closed
1 month ago
1
investigate how S7 object size increases
#37
kelly-sovacool
closed
2 months ago
6
turn on code coverage
#36
kelly-sovacool
closed
4 months ago
0
Add NIDAP template - Filter Counts
#35
kelly-sovacool
closed
1 month ago
0
create action to assign POC when label added
#34
kelly-sovacool
closed
5 months ago
0
test #2
#33
kelly-sovacool
closed
4 months ago
0
test issue for trello
#32
kelly-sovacool
closed
4 months ago
0
docs: testing Commit process
#31
phoman14
closed
4 months ago
0
demo PR process
#30
kelly-sovacool
closed
4 months ago
0
Create contributing guidelines
#29
kelly-sovacool
closed
4 months ago
2
Create beginnings of introductory vignette
#28
kelly-sovacool
closed
6 months ago
0
Incorporate Sam's edits
#27
kelly-sovacool
closed
4 months ago
0
Add check for R 4.1 for NIDAP
#26
kelly-sovacool
closed
4 months ago
3
gene co-expression network inference
#25
kelly-sovacool
opened
8 months ago
0
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