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CCBR
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MOSuite
MultiOmicsSuite: R package for downstream multi-omics analysis
https://ccbr.github.io/reneeTools/
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ci: improve docker workflow to push latest tag on release
#24
kelly-sovacool
closed
9 months ago
0
write contributing docs
#23
kelly-sovacool
closed
4 months ago
2
minor tweaks to docs
#22
kelly-sovacool
closed
9 months ago
0
ci: run update-citation-cff action on PRs & use pre-commit hooks
#21
kelly-sovacool
closed
10 months ago
0
Create citation.cff & action to update it automatically with cffr package
#20
kelly-sovacool
closed
10 months ago
0
batch effect correction
#19
kelly-sovacool
opened
10 months ago
0
differential expression with limma-voom
#18
kelly-sovacool
opened
10 months ago
0
add contrasts property to reneeDataSet
#17
kelly-sovacool
opened
10 months ago
1
feat: create reneeDataSet class
#16
kelly-sovacool
closed
10 months ago
0
feat: create Dockerfile & automatically build on release
#15
kelly-sovacool
closed
10 months ago
0
Write an introductory vignette
#14
kelly-sovacool
opened
10 months ago
0
feat: create DESeq object from RSEM expected counts
#13
kelly-sovacool
closed
10 months ago
0
Use DESeq2::collapseReplicates() for technical replicates
#12
kelly-sovacool
opened
10 months ago
0
Differential expression with DESeq2
#11
kelly-sovacool
closed
10 months ago
0
Create filter_low_counts()
#10
kelly-sovacool
closed
10 months ago
0
Create a Docker container
#9
kelly-sovacool
closed
10 months ago
0
feat: incorporate iDEP
#8
kelly-sovacool
opened
1 year ago
0
feat: ORA & GSEA from gene list
#7
kelly-sovacool
opened
1 year ago
0
feat: draw pca plot
#6
kelly-sovacool
opened
1 year ago
1
Set up basic package infrastructure
#5
kelly-sovacool
closed
1 year ago
0
set up CI check
#4
kelly-sovacool
closed
1 year ago
0
feat: read_sampleinfo.R
#3
kopardev
closed
10 months ago
2
feat: filter_low_counts.R
#2
kopardev
closed
10 months ago
1
adding basic github actions
#1
kopardev
closed
1 year ago
0
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