Initial ChIP-seq QC pipeline improvements

CCBR / Pipeliner

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

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Initial ChIP-seq QC pipeline improvements #346

Closed tovahmarkowitz closed 5 years ago

tovahmarkowitz commented 5 years ago

Cleaned up InitialChIPseqQC.snakefile to remove unused functions and ensure all QC analyses included in the pipeline actually run.

Added fingerprint plots and removed pearson correlation plots (kept spearman correlation).

Now requires peakcall.tab in the rawdata file and symlinks file when initializes folder.

kopardev commented 5 years ago

@tovahmarkowitz it seems that tovahmarkowitz:activeDev 5 commits behind CCBR:activeDev.. Can you please bring it upto speed and resubmit the pull request, so I can test it.

skchronicles commented 5 years ago

Tovah is going to make additional changes