Closed skchronicles closed 5 years ago
Generated MEMEchip ref.fa.fai
files for the following ChIP-seq Reference Genomes:
/data/CCBR_Pipeliner/db/PipeDB/Indices/hg19_basic
/data/CCBR_Pipeliner/db/PipeDB/Indices/hg38_basic
/data/CCBR_Pipeliner/db/PipeDB/Indices/mm9_basic
/data/CCBR_Pipeliner/db/PipeDB/Indices/mm10_basic
Generate new ChIP-seq Reference Files
MEME-chip needs indexed fasta files (ref.fa.fai). For each of the reference genomes supported by the ChIP-seq pipeline:
samtools faidx