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Pipeliner
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
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ChIP-seq changes
#376
Closed
tovahmarkowitz
closed
5 years ago
tovahmarkowitz
commented
5 years ago
new cutadapt rule
reorganization of InitialChIPseq.snakefile to limit duplicated rules and ensure all rules run under proper conditions
adjusted ppqt analyses for QC and cross-correlation
read extension for SE sequencing data for bigwig creation
input-normalized bigwig creation when applicable
addition of fingerprint plots, heatmaps around scaled genes and TSSs, profile plots around scaled genes and TSSs
improved multiQC files
and many other bug fixes