Current version of QC portion of pipeline designed to run to completion with Picard deduplication outputs.
Many QC metrics do not work with MACS2 deduplication.
Features that work with both: fingerprint plots, PCA, correlation heatmaps
Features that are MACS2 deduplication specific: NGSQC plots
Current version of QC portion of pipeline designed to run to completion with Picard deduplication outputs. Many QC metrics do not work with MACS2 deduplication. Features that work with both: fingerprint plots, PCA, correlation heatmaps Features that are MACS2 deduplication specific: NGSQC plots