This update includes a number of improvements to the current pipeline:
1) improved steps handling estimated fragment length (ppqt) to allow corrections when the first ppqt estimated fragment length is not biologically possible
2) cleaned up some problems with DiffBind so that the script doesn't automatically die when certain plots cannot be created
3) made jaccard plots pdfs instead of pngs
4) made some changes to FRiP plotting, more needed to solve all problems
This update includes a number of improvements to the current pipeline:
1) improved steps handling estimated fragment length (ppqt) to allow corrections when the first ppqt estimated fragment length is not biologically possible
2) cleaned up some problems with DiffBind so that the script doesn't automatically die when certain plots cannot be created
3) made jaccard plots pdfs instead of pngs
4) made some changes to FRiP plotting, more needed to solve all problems
5) Changed memory requests for BWA rules