ChIP-seq improvements - Githubissues

CCBR / Pipeliner

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

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ChIP-seq improvements #460

Closed tovahmarkowitz closed 3 years ago

tovahmarkowitz commented 3 years ago

This pull request involves the following changes:

1) FRiP visualization improvements (now uses R) and pdf file format. Also improved speed of FRiP processing by allowing for more parallelization. 2) Improved mapQ filtering for PE data using Vishal's python script (#457 ) 3) Using picard to calculate insert sizes for PE data (#458 ) 4) Using median insert size for peak calling using sicer for PE data 5) minor bug fixes

skchronicles commented 3 years ago

Thanks @tovahmarkowitz for submitting the PR, everything looks good!