PIM not working for custom genome

CCBR / Pipeliner

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

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PIM not working for custom genome #473

Closed ky66 closed 2 years ago

ky66 commented 2 years ago

I used the PIM tool to generate reference files for my custom genome that is not listed in the CCBR pipeliner GUI. PIM failed for my FASTA and GTF and I cannot pinpoint what the exact problem is with PIM. How can I troubleshoot here?

Thanks

skchronicles commented 2 years ago

Duplicated issue, see issue https://github.com/CCBR/Pipeliner/issues/471 for continued discussion and more information.