issues
search
CCBR
/
Pipeliner
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
4
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Enhancing/refining Pipeliner documentation
#333
pajailwala
closed
2 years ago
1
Revert "test commit"
#332
pajailwala
closed
6 years ago
0
test commit
#331
pajailwala
closed
6 years ago
0
testing
#330
kopardev
closed
6 years ago
0
GSEA
#329
kopardev
opened
6 years ago
0
Annotation file
#328
kopardev
closed
5 years ago
1
Differential ChIPSeq exploration
#327
kopardev
closed
4 years ago
1
QC table for ChIPSeq
#326
kopardev
closed
6 years ago
1
Covariates
#325
kopardev
opened
6 years ago
0
Redesign DEG folders
#324
kopardev
closed
5 years ago
1
PCA generation in QC step.
#323
kopardev
closed
5 years ago
0
scRNAseq pipeline version 2.0
#322
nikhilbg
closed
6 years ago
0
Added interactive histograms
#321
skchronicles
closed
6 years ago
0
updated VEP filter VCF to ExAC r0.3.1
#320
jlac
closed
6 years ago
0
updated versions and processing of MAF files
#319
jlac
closed
6 years ago
0
added hg38 custom PON to WGS and WES somatic pipelines
#318
jlac
closed
6 years ago
0
repaired multithreading issues with qualimap
#317
jlac
closed
6 years ago
0
updated versions for cnvkit and manta
#316
jlac
closed
6 years ago
0
This is for the cpm filtering as it was not doing cpm twice, I only c…
#315
abdallahamr
closed
6 years ago
0
removed realign and recal from WES somatic and germline calling stage…
#314
jlac
closed
6 years ago
0
data/work folder is copy paste on gui... workflow error fix
#313
abdallahamr
closed
6 years ago
1
updated version of multiqc to v1.3
#312
jlac
closed
6 years ago
0
fixed bugs in fusion expression cleanup
#311
jlac
closed
6 years ago
0
changed path to Oncofuse.jar file
#310
jlac
closed
6 years ago
0
removed subhead from expression rules for fusion pipeline
#309
jlac
closed
6 years ago
0
added somatic mutation filtering to MAF processing; repaired rnaseq jsons for fusion and variant calling
#308
jlac
closed
6 years ago
0
fixed Canvas version module
#307
jlac
closed
6 years ago
0
repaired missing reference resources for fusion and ranseqvar pipelines
#306
jlac
closed
6 years ago
0
added population allele frequency filtering to MAF and set 10-samples threshold for mutsig to run
#305
jlac
closed
6 years ago
0
fixed X1 graphics bug in qualimap
#304
jlac
closed
6 years ago
0
201707 branch pull 171212
#303
kopardev
closed
6 years ago
0
extended support to labels.txt
#302
kopardev
closed
6 years ago
0
201707 branch pull ... this will be version 3.0
#301
kopardev
closed
6 years ago
0
reduced mutect2 multithreading
#300
jlac
closed
6 years ago
0
fixed GATK bug in split cigar rule
#299
jlac
closed
6 years ago
0
repaired bug when rnaseqvarcalling input reads vary in length
#298
jlac
closed
6 years ago
0
repaired oncofuse annotation bug
#297
jlac
closed
6 years ago
0
improved memory usage
#296
jlac
closed
6 years ago
0
added HPC usage tabel generation to exome, genome, fusion, and RNAseq…
#295
jlac
closed
6 years ago
0
201707 branch
#294
kopardev
closed
6 years ago
0
Pull from master branch 171010
#293
vnkoparde
closed
6 years ago
1
repaired bug in generating fusion inspector input from fusion catcher output
#292
jlac
closed
6 years ago
0
repaired bugs in fusion summary scripts
#291
jlac
closed
6 years ago
0
Jack Chen pull request
#290
xc611
closed
6 years ago
0
repaired mm10 fusion summary bug
#289
jlac
closed
6 years ago
0
added summarizing tables to CNVkit summary outputs
#288
jlac
closed
6 years ago
0
set many expression file to 'temp'
#287
jlac
closed
6 years ago
0
added cleanup rule for rnafusion pipeline
#286
jlac
closed
6 years ago
0
added expression one counts to fusion pipeline; repaired GUI to show proper path to default hg38 bed file
#285
jlac
closed
6 years ago
0
increased admixture multithreading; improved Canvas tumor/norm WGS performance and output
#284
jlac
closed
6 years ago
0
Previous
Next