CCRGeneticsBranch / Oncogenomics_v2

Oncogenomics portal version 2
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Containerize OncogenomicsV2 #14

Closed hsienchao closed 3 weeks ago

hsienchao commented 5 months ago

I will redeploy the V2 docker. But I need the S3 gateway to be mounted on EC2 instance. The ticket(NCI-RITM0532693) was submitted. I got reply from Syed Hussain. But it seems the content is not right:

[chouh@nciws-d2407-c nci_ccr_gb_oncogenomics_sg]$ ll total 2488 lrwxrwxrwx. 1 root root 7 May 21 2018 bin -> usr/bin dr-xr-xr-x. 5 root root 4096 Jun 4 07:39 boot -rw-r--r--. 1 root root 2513700 Jan 8 2018 cbiit-carbonblack-5.2.12.70825-1.el7.x86_64.rpm drwxr-xr-x. 2 root root 6 May 1 2017 dev drwxr-xr-x. 92 root root 8192 Jun 13 16:00 etc drwxr-xr-x. 14 root root 208 Jun 13 13:48 home lrwxrwxrwx. 1 root root 7 May 21 2018 lib -> usr/lib lrwxrwxrwx. 1 root root 9 May 21 2018 lib64 -> usr/lib64 drwxr-xr-x. 2 root root 6 Mar 15 2019 local drwxr-xr-x. 2 root root 6 Jan 27 2020 mark drwxr-xr-x. 2 root root 6 Apr 11 2018 media drwxr-xr-x. 3 root root 40 Jun 13 16:32 mnt drwxr-xr-x. 12 root root 169 Jun 3 20:43 opt drwxr-xr-x. 2 root root 6 May 1 2017 proc dr-xr-x---. 11 root root 4096 Jun 3 20:52 root drwxr-xr-x. 2 root root 6 May 1 2017 run lrwxrwxrwx. 1 root root 8 May 21 2018 sbin -> usr/sbin drwxr-xr-x. 2 root root 6 Apr 11 2018 srv drwxr-xr-x. 2 root root 6 May 1 2017 sys drwxrwxrwt. 13 root root 4096 Jun 13 16:56 tmp drwxr-xr-x. 15 root root 178 Jan 11 2021 usr drwxr-xr-x. 21 root root 4096 May 13 09:07 var

hsienchao commented 2 months ago
  1. I have merged the coding and pushed to github.
  2. I found I don't have sudo permission. There is no git and docker composer installed. I've requested Srujan to grant me sudo privilege.
hsienchao commented 1 month ago

With the help from Srujan and Nelson, I am able to run "sudo docker compose" now.

hsienchao commented 1 month ago

https://10.209.132.12/clinomics/public/