Installation

1. git clone

   git clone git@github.com:CCRGeneticsBranch/Oncogenomics_v2.git clinomics

2. composer install

   cd clinomics
   composer install

3. change storage permission

   chmod g+w storage/logs
   chmod g+w storage/framework/views
   chmod g+w storage/framework/cache

4. set site_data link

   ln -s /mnt/projects/CCR-JK-oncogenomics/static/site_data/dev/ site_data

5. edit .env file

   
   APP_NAME=Laravel
   APP_ENV=local
   APP_KEY=
   APP_DEBUG=true
   APP_URL=https://fsabcl-onc01d.ncifcrf.gov

LOG_CHANNEL=stack LOG_DEPRECATIONS_CHANNEL=null LOG_LEVEL=debug

DB_CONNECTION=oracle DB_HOST= DB_PORT= DB_DATABASE= DB_USERNAME= DB_PASSWORD=

IS_PUBLIC_SITE=0 AUTH_REDIRECT=https://fsabcl-onc01d.ncifcrf.gov/clinomicsd/public/login AUTH_OATH=https://stsstg.nih.gov/auth/oauth/v2/authorize AUTH_CLIENT_ID= AUTH_CLIENT_SECRETE= AUTH_SCOPE=email+profile+openid AUTH_WEBSITE=https://stsstg.nih.gov URL=https://fsabcl-onc01t.ncifcrf.gov/clinomicsd/public URL_PRODUCTION=https://oncogenomics.ccr.cancer.gov/production/public URL_PUBLIC=https://clinomics.ccr.cancer.gov/clinomics/public/ URL_DEV=https://fsabcl-onc01d.ncifcrf.gov/clinomics_dev/public R_LIBS=/mnt/nasapps/development/R/r_libs/4.0.2/ R_PATH=/mnt/nasapps/development/R/4.0.2/bin/ LD_LIBRARY_PATH=/mnt/nasapps/development/R/shared_libs/4.0.2 MOUNT=/mnt/projects/CCR-JK-oncogenomics/static/clones/clinomics MOUNT_PUBLIC=/mnt/projects/CCR-JK-oncogenomics/static/clones/clinomics_public AVIA=true TOKEN= PUBLIC_TOKEN=

BROADCAST_DRIVER=log CACHE_DRIVER=file FILESYSTEM_DRIVER=local QUEUE_CONNECTION=sync SESSION_DRIVER=cookie SESSION_LIFETIME=86400 SESSION_SECURE_COOKIE=true

MEMCACHED_HOST=127.0.0.1

REDIS_HOST=127.0.0.1 REDIS_PASSWORD=null REDIS_PORT=6379

MAIL_FROM_ADDRESS=oncogenomics@mail.nih.gov MAIL_MAILER=sendmail MAIL_HOST=mailfwd.nih.gov MAIL_PORT=587 MAIL_USERNAME=null MAIL_PASSWORD=null MAIL_ENCRYPTION=tls MAIL_FROM_NAME=Oncogenomics

AWS_ACCESS_KEY_ID= AWS_SECRET_ACCESS_KEY= AWS_DEFAULT_REGION=us-east-1 AWS_BUCKET= AWS_USE_PATH_STYLE_ENDPOINT=false

PUSHER_APP_ID= PUSHER_APP_KEY= PUSHER_APP_SECRET= PUSHER_APP_CLUSTER=mt1

MIX_PUSHER_APP_KEY="${PUSHER_APP_KEY}" MIX_PUSHER_APP_CLUSTER="${PUSHER_APP_CLUSTER}"