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CCRGeneticsBranch / Oncogenomics_v2

Oncogenomics portal version 2
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Sensitive information on public databases: #22

Open khanjav opened 1 year ago

khanjav commented 1 year ago

We do need to think about what data we can release on our public database.

I think we will have to remove patient level variant data for the RNAseq and germline.

I am not sure if we are permitted to release the somatic variant data publicly at the patient level. We may need to remove the HLA data from the public site.

I am not sure about the Neoantigen prediction.

We may have to remove most of the metadata except diagnosis.

I think the summary level data is fine.

I think releasing cell line data is fine.

khanjav commented 11 months ago

We need to think about how we can get dbGAP handshake to give permission to see sensitive data on https://clinomics.ccr.cancer.gov/clinomics/public/ as part of the authentication process.