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CCRGeneticsBranch / Oncogenomics_v2

Oncogenomics portal version 2
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Copy COAD_Evolution_Ried to public site #56

Open hsienchao opened 3 months ago

hsienchao commented 3 months ago

Fixed "syncPublic.sh" issues due to the reorganized folder structures. For the project, I found there are too many somatic mutations

Patient Case Sample Type Count
COAD_Patient1 COAD_Patient1_M1BC COAD_Patient1_M1BC_E_HFT7YDSX3 germline 721
COAD_Patient1 COAD_Patient1_M1BC COAD_Patient1_M1BC_E_HFT7YDSX3 somatic 1486
COAD_Patient1 COAD_Patient1_M1BC COAD_Patient1_N1_E_HFT7YDSX3 germline 1885
COAD_Patient1 COAD_Patient1_M1BC COAD_Patient1_N1_E_HFT7YDSX3 somatic 1486
COAD_Patient1 COAD_Patient1_T1A COAD_Patient1_N1_E_HFT7YDSX3 germline 1885
COAD_Patient1 COAD_Patient1_T1A COAD_Patient1_N1_E_HFT7YDSX3 somatic 21985
COAD_Patient1 COAD_Patient1_T1B COAD_Patient1_N1_E_HFT7YDSX3 germline 1885
COAD_Patient1 COAD_Patient1_T1B COAD_Patient1_N1_E_HFT7YDSX3 somatic 1651
COAD_Patient1 COAD_Patient1_T1C COAD_Patient1_N1_E_HFT7YDSX3 germline 1885
COAD_Patient1 COAD_Patient1_T1C COAD_Patient1_N1_E_HFT7YDSX3 somatic 1364
COAD_Patient1 COAD_Patient1_T1D COAD_Patient1_N1_E_HFT7YDSX3 germline 1885
COAD_Patient1 COAD_Patient1_T1D COAD_Patient1_N1_E_HFT7YDSX3 somatic 953
COAD_Patient1 COAD_Patient1_T1A COAD_Patient1_T1A_E_HFT7YDSX3 germline 646
COAD_Patient1 COAD_Patient1_T1A COAD_Patient1_T1A_E_HFT7YDSX3 somatic 21985
COAD_Patient1 COAD_Patient1_T1B COAD_Patient1_T1B_E_HFT7YDSX3 germline 694
COAD_Patient1 COAD_Patient1_T1B COAD_Patient1_T1B_E_HFT7YDSX3 somatic 1651
COAD_Patient1 COAD_Patient1_T1C COAD_Patient1_T1C_E_HFT7YDSX3 germline 680
COAD_Patient1 COAD_Patient1_T1C COAD_Patient1_T1C_E_HFT7YDSX3 somatic 1364
COAD_Patient1 COAD_Patient1_T1D COAD_Patient1_T1D_E_HFT7YDSX3 germline 645
COAD_Patient1 COAD_Patient1_T1D COAD_Patient1_T1D_E_HFT7YDSX3 somatic 953
COAD_Patient2 COAD_Patient2_M2ABC COAD_Patient2_M2ABC_E_HFT7YDSX3 germline 549
COAD_Patient2 COAD_Patient2_M2ABC COAD_Patient2_M2ABC_E_HFT7YDSX3 somatic 893
COAD_Patient2 COAD_Patient2_M2ABC COAD_Patient2_N2_E_HFT7YDSX3 germline 2827
COAD_Patient2 COAD_Patient2_M2ABC COAD_Patient2_N2_E_HFT7YDSX3 somatic 893
COAD_Patient2 COAD_Patient2_T2A COAD_Patient2_N2_E_HFT7YDSX3 germline 2827
COAD_Patient2 COAD_Patient2_T2A COAD_Patient2_N2_E_HFT7YDSX3 somatic 1103
COAD_Patient2 COAD_Patient2_T2B COAD_Patient2_N2_E_HFT7YDSX3 germline 2827
COAD_Patient2 COAD_Patient2_T2B COAD_Patient2_N2_E_HFT7YDSX3 somatic 1462
COAD_Patient2 COAD_Patient2_T2C COAD_Patient2_N2_E_HFT7YDSX3 germline 2827
COAD_Patient2 COAD_Patient2_T2C COAD_Patient2_N2_E_HFT7YDSX3 somatic 1282
COAD_Patient2 COAD_Patient2_T2D COAD_Patient2_N2_E_HFT7YDSX3 germline 2827
COAD_Patient2 COAD_Patient2_T2D COAD_Patient2_N2_E_HFT7YDSX3 somatic 1502
COAD_Patient2 COAD_Patient2_T2A COAD_Patient2_T2A_E_HFT7YDSX3 germline 581
COAD_Patient2 COAD_Patient2_T2A COAD_Patient2_T2A_E_HFT7YDSX3 somatic 1103
COAD_Patient2 COAD_Patient2_T2B COAD_Patient2_T2B_E_HFT7YDSX3 germline 540
COAD_Patient2 COAD_Patient2_T2B COAD_Patient2_T2B_E_HFT7YDSX3 somatic 1462
COAD_Patient2 COAD_Patient2_T2C COAD_Patient2_T2C_E_HFT7YDSX3 germline 518
COAD_Patient2 COAD_Patient2_T2C COAD_Patient2_T2C_E_HFT7YDSX3 somatic 1282
COAD_Patient2 COAD_Patient2_T2D COAD_Patient2_T2D_E_HFT7YDSX3 germline 570
COAD_Patient2 COAD_Patient2_T2D COAD_Patient2_T2D_E_HFT7YDSX3 somatic 1502
COAD_Patient3 COAD_Patient3_M3 COAD_Patient3_M3_E_H5GJCDRX2 germline 743
COAD_Patient3 COAD_Patient3_M3 COAD_Patient3_M3_E_H5GJCDRX2 somatic 965
COAD_Patient3 COAD_Patient3_M3 COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 germline 1030
COAD_Patient3 COAD_Patient3_M3 COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 somatic 965
COAD_Patient3 COAD_Patient3_T3A COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 germline 1030
COAD_Patient3 COAD_Patient3_T3A COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 somatic 1719
COAD_Patient3 COAD_Patient3_T3B COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 germline 1030
COAD_Patient3 COAD_Patient3_T3B COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 somatic 2122
COAD_Patient3 COAD_Patient3_T3C COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 germline 1030
COAD_Patient3 COAD_Patient3_T3C COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 somatic 1993
COAD_Patient3 COAD_Patient3_T3D COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 germline 1030
COAD_Patient3 COAD_Patient3_T3D COAD_Patient3_N3_E_H5GJCDRX2_HFT7YDSX3 somatic 960
COAD_Patient3 COAD_Patient3_T3A COAD_Patient3_T3A_E_H5GJCDRX2 germline 751
COAD_Patient3 COAD_Patient3_T3A COAD_Patient3_T3A_E_H5GJCDRX2 somatic 1719
COAD_Patient3 COAD_Patient3_T3B COAD_Patient3_T3B_E_H5GJCDRX2 germline 758
COAD_Patient3 COAD_Patient3_T3B COAD_Patient3_T3B_E_H5GJCDRX2 somatic 2122
COAD_Patient3 COAD_Patient3_T3C COAD_Patient3_T3C_E_H5GJCDRX2 germline 748
COAD_Patient3 COAD_Patient3_T3C COAD_Patient3_T3C_E_H5GJCDRX2 somatic 1993
COAD_Patient3 COAD_Patient3_T3D COAD_Patient3_T3D_E_H5GJCDRX2 germline 770
COAD_Patient3 COAD_Patient3_T3D COAD_Patient3_T3D_E_H5GJCDRX2 somatic 960
COAD_Patient4 COAD_Patient4_M4ABCD COAD_Patient4_M4ABCD_E_HFT7YDSX3 germline 710
COAD_Patient4 COAD_Patient4_M4ABCD COAD_Patient4_M4ABCD_E_HFT7YDSX3 somatic 886
COAD_Patient4 COAD_Patient4_M4ABCD COAD_Patient4_N4_E_HFT7YDSX3 germline 2005
COAD_Patient4 COAD_Patient4_M4ABCD COAD_Patient4_N4_E_HFT7YDSX3 somatic 886
COAD_Patient4 COAD_Patient4_T4A COAD_Patient4_N4_E_HFT7YDSX3 germline 2005
COAD_Patient4 COAD_Patient4_T4A COAD_Patient4_N4_E_HFT7YDSX3 somatic 1156
COAD_Patient4 COAD_Patient4_T4B COAD_Patient4_N4_E_HFT7YDSX3 germline 2005
COAD_Patient4 COAD_Patient4_T4B COAD_Patient4_N4_E_HFT7YDSX3 somatic 1820
COAD_Patient4 COAD_Patient4_T4C COAD_Patient4_N4_E_HFT7YDSX3 germline 2005
COAD_Patient4 COAD_Patient4_T4C COAD_Patient4_N4_E_HFT7YDSX3 somatic 2373
COAD_Patient4 COAD_Patient4_T4A COAD_Patient4_T4A_E_HFT7YDSX3 germline 681
COAD_Patient4 COAD_Patient4_T4A COAD_Patient4_T4A_E_HFT7YDSX3 somatic 1156
COAD_Patient4 COAD_Patient4_T4B COAD_Patient4_T4B_E_HFT7YDSX3 germline 725
COAD_Patient4 COAD_Patient4_T4B COAD_Patient4_T4B_E_HFT7YDSX3 somatic 1820
COAD_Patient4 COAD_Patient4_T4C COAD_Patient4_T4C_E_HFT7YDSX3 germline 740
COAD_Patient4 COAD_Patient4_T4C COAD_Patient4_T4C_E_HFT7YDSX3 somatic 2373
COAD_Patient5 COAD_Patient5_T5A COAD_Patient5_N5_E_HFT7YDSX3 germline 1047
COAD_Patient5 COAD_Patient5_T5A COAD_Patient5_N5_E_HFT7YDSX3 somatic 1761
COAD_Patient5 COAD_Patient5_T5C COAD_Patient5_N5_E_HFT7YDSX3 germline 1046
COAD_Patient5 COAD_Patient5_T5C COAD_Patient5_N5_E_HFT7YDSX3 somatic 1272
COAD_Patient5 COAD_Patient5_T5D COAD_Patient5_N5_E_HFT7YDSX3 germline 1049
COAD_Patient5 COAD_Patient5_T5D COAD_Patient5_N5_E_HFT7YDSX3 somatic 1408
COAD_Patient5 COAD_Patient5_T5A COAD_Patient5_T5A_E_HFT7YDSX3 germline 768
COAD_Patient5 COAD_Patient5_T5A COAD_Patient5_T5A_E_HFT7YDSX3 somatic 1761
COAD_Patient5 COAD_Patient5_T5C COAD_Patient5_T5C_E_HFT7YDSX3 germline 808
COAD_Patient5 COAD_Patient5_T5C COAD_Patient5_T5C_E_HFT7YDSX3 somatic 1272
COAD_Patient5 COAD_Patient5_T5D COAD_Patient5_T5D_E_HFT7YDSX3 germline 782
COAD_Patient5 COAD_Patient5_T5D COAD_Patient5_T5D_E_HFT7YDSX3 somatic 1408
COAD_Patient6 COAD_Patient6_M6ABCD COAD_Patient6_M6ABCD_E_HFT7YDSX3 germline 647
COAD_Patient6 COAD_Patient6_M6ABCD COAD_Patient6_M6ABCD_E_HFT7YDSX3 somatic 3176
COAD_Patient6 COAD_Patient6_M6ABCD COAD_Patient6_N6_E_HFT7YDSX3 germline 1356
COAD_Patient6 COAD_Patient6_M6ABCD COAD_Patient6_N6_E_HFT7YDSX3 somatic 3176
COAD_Patient6 COAD_Patient6_T6A COAD_Patient6_N6_E_HFT7YDSX3 germline 1355
COAD_Patient6 COAD_Patient6_T6A COAD_Patient6_N6_E_HFT7YDSX3 somatic 2258
COAD_Patient6 COAD_Patient6_T6B COAD_Patient6_N6_E_HFT7YDSX3 germline 1357
COAD_Patient6 COAD_Patient6_T6B COAD_Patient6_N6_E_HFT7YDSX3 somatic 1933
COAD_Patient6 COAD_Patient6_T6A COAD_Patient6_T6A_E_HFT7YDSX3 germline 711
COAD_Patient6 COAD_Patient6_T6A COAD_Patient6_T6A_E_HFT7YDSX3 somatic 2258
COAD_Patient6 COAD_Patient6_T6B COAD_Patient6_T6B_E_HFT7YDSX3 germline 694
COAD_Patient6 COAD_Patient6_T6B COAD_Patient6_T6B_E_HFT7YDSX3 somatic 1933
COAD_Patient8 COAD_Patient8_M8BCD COAD_Patient8_M8BCD_E_HFT7YDSX3 germline 739
COAD_Patient8 COAD_Patient8_M8BCD COAD_Patient8_M8BCD_E_HFT7YDSX3 somatic 3432
COAD_Patient8 COAD_Patient8_M8 COAD_Patient8_M8_E_H5GJCDRX2_HFT7YDSX3 germline 752
COAD_Patient8 COAD_Patient8_M8 COAD_Patient8_M8_E_H5GJCDRX2_HFT7YDSX3 somatic 3774
COAD_Patient8 COAD_Patient8_M8 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 germline 1031
COAD_Patient8 COAD_Patient8_M8 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 somatic 3774
COAD_Patient8 COAD_Patient8_M8BCD COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 germline 1028
COAD_Patient8 COAD_Patient8_M8BCD COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 somatic 3432
COAD_Patient8 COAD_Patient8_T8A2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 germline 1032
COAD_Patient8 COAD_Patient8_T8A2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 somatic 862
COAD_Patient8 COAD_Patient8_T8B2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 germline 1033
COAD_Patient8 COAD_Patient8_T8B2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 somatic 956
COAD_Patient8 COAD_Patient8_T8C2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 germline 1030
COAD_Patient8 COAD_Patient8_T8C2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 somatic 1186
COAD_Patient8 COAD_Patient8_T8D2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 germline 1032
COAD_Patient8 COAD_Patient8_T8D2 COAD_Patient8_N8_E_H5GJCDRX2_HFT7YDSX3 somatic 670
COAD_Patient8 COAD_Patient8_T8A2 COAD_Patient8_T8A2_E_HFT7YDSX3 germline 761
COAD_Patient8 COAD_Patient8_T8A2 COAD_Patient8_T8A2_E_HFT7YDSX3 somatic 862
COAD_Patient8 COAD_Patient8_T8B2 COAD_Patient8_T8B2_E_HFT7YDSX3 germline 786
COAD_Patient8 COAD_Patient8_T8B2 COAD_Patient8_T8B2_E_HFT7YDSX3 somatic 956
COAD_Patient8 COAD_Patient8_T8C2 COAD_Patient8_T8C2_E_H5GJCDRX2_HFT7YDSX3 germline 764
COAD_Patient8 COAD_Patient8_T8C2 COAD_Patient8_T8C2_E_H5GJCDRX2_HFT7YDSX3 somatic 1186
COAD_Patient8 COAD_Patient8_T8D2 COAD_Patient8_T8D2_E_HFT7YDSX3 germline 756
COAD_Patient8 COAD_Patient8_T8D2 COAD_Patient8_T8D2_E_HFT7YDSX3 somatic 670
COAD_Patient9 COAD_Patient9_T9A COAD_Patient9_N9_E_HFT7YDSX3 germline 992
COAD_Patient9 COAD_Patient9_T9A COAD_Patient9_N9_E_HFT7YDSX3 somatic 301
COAD_Patient9 COAD_Patient9_T9B COAD_Patient9_N9_E_HFT7YDSX3 germline 994
COAD_Patient9 COAD_Patient9_T9B COAD_Patient9_N9_E_HFT7YDSX3 somatic 293
COAD_Patient9 COAD_Patient9_T9C COAD_Patient9_N9_E_HFT7YDSX3 germline 993
COAD_Patient9 COAD_Patient9_T9C COAD_Patient9_N9_E_HFT7YDSX3 somatic 163
COAD_Patient9 COAD_Patient9_T9A COAD_Patient9_T9A_E_HFT7YDSX3 germline 817
COAD_Patient9 COAD_Patient9_T9A COAD_Patient9_T9A_E_HFT7YDSX3 somatic 301
COAD_Patient9 COAD_Patient9_T9B COAD_Patient9_T9B_E_HFT7YDSX3 germline 827
COAD_Patient9 COAD_Patient9_T9B COAD_Patient9_T9B_E_HFT7YDSX3 somatic 293
COAD_Patient9 COAD_Patient9_T9C COAD_Patient9_T9C_E_HFT7YDSX3 germline 813
COAD_Patient9 COAD_Patient9_T9C COAD_Patient9_T9C_E_HFT7YDSX3 somatic 163