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datasets-sars-cov-2
Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
Apache License 2.0
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Information about Supplementary_Table2_datasetsQC.xlsx
#34
smanfri
opened
1 year ago
2
Better tests
#33
lskatz
closed
1 year ago
0
removed dangling tab from data section
#32
MarieLataretu
closed
1 year ago
3
add link to publication
#31
kapsakcj
closed
1 year ago
1
Internally curated consensus sequences for lineages
#30
gcha31
opened
1 year ago
1
Parallelize ci
#29
lskatz
closed
2 years ago
0
Fix hashsums
#28
lskatz
closed
2 years ago
0
Make clean
#27
lskatz
closed
2 years ago
0
Update installation docs
#26
lskatz
closed
2 years ago
0
fixed 01 test bug; updated checksums; added null tree target
#25
lskatz
closed
2 years ago
0
update summary table in readme and primer strategy for voivoc and nonvoivoc
#24
daisy0223
closed
2 years ago
0
update summary table in readme.md
#23
daisy0223
closed
2 years ago
0
adding data mining scripts
#22
jvhagey
closed
2 years ago
0
updated amplicon strategy for nonvoivoc and voivoc datasets
#21
daisy0223
closed
2 years ago
0
fix typos in docker/singularity instructions
#20
kapsakcj
closed
2 years ago
2
Update GenFSGopher.pl
#19
jvhagey
closed
2 years ago
0
added install & usage for conda/docker/singularity
#18
kapsakcj
closed
2 years ago
1
Fix truncated reads
#17
lskatz
closed
2 years ago
0
Request for inclusion of primer protocol data in dataset TSVs
#16
kevinlibuit
closed
2 years ago
3
VCF files for all data sets
#15
vipmenon
opened
2 years ago
1
Made fastq-dump work properly for paired reads
#14
BioWilko
closed
2 years ago
1
CoronaHiT routine Illumina read files are truncated
#13
BioWilko
closed
2 years ago
4
CONTRIBUTIONS.md
#12
lskatz
closed
2 years ago
1
Main
#11
lskatz
closed
2 years ago
0
Add GenBank accessions for CoronaHiT samples
#10
andrewjpage
closed
2 years ago
2
dataset #6 lineage assignment validation
#9
chienchi
closed
2 years ago
2
Issue with downloading datasets 2 and 3
#8
eskinner
closed
2 years ago
2
ref genome nomenclature
#7
lskatz
opened
2 years ago
0
updated gisaid info for voivoc and nonvoivoc
#6
daisy0223
closed
2 years ago
1
VOI/VOC table is missing accessions for consensus genomes
#5
proychou
closed
2 years ago
5
Add shuffle_reads.pl script
#4
pvanheus
closed
2 years ago
1
Mention the need to set email address for edirect
#3
pvanheus
closed
2 years ago
1
Consensus query
#2
iqbal-lab
closed
2 years ago
4
bioconda plans?
#1
kapsakcj
closed
2 years ago
9