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CDCgov
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polkapox
Apache License 2.0
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[External] [Bug] Unable to run pipeline
#34
ammaraziz
opened
3 days ago
1
[Internal] [Feature] Add Nextstrain classification to summary qc script
#33
kyleoconnell
opened
1 week ago
0
[Internal] [Feature] Add AT Repeat Finder Script
#32
kyleoconnell
opened
1 week ago
0
[Internal] [Feature] Validate assembly on other pox species
#31
kyleoconnell
opened
1 week ago
0
[Internal] [Feature] Add support for amplicon data
#30
kyleoconnell
opened
1 week ago
0
[Internal] [Feature] Add support for long read and hybrid assembly
#29
kyleoconnell
opened
1 week ago
0
[Internal] [Feature] Validate updated workflow on Clade I and II validated reference assemblies
#28
kyleoconnell
opened
1 week ago
0
Unicyler refactoring kao Clade I Rewrite
#27
kyleoconnell
opened
2 months ago
2
Sra test data kao
#26
kyleoconnell
closed
2 months ago
1
Create new columns in sample_summary.tsv
#25
jessicarowell
closed
5 months ago
4
Samplesheet multilevel nesting ick4
#24
jessicarowell
closed
5 months ago
4
[Internal] [Feature] Add full FASTA/FASTQ paths to output summary.tsv
#23
mikeyweigand
closed
5 months ago
0
[Internal] [Feature] Add SRA download module for test data to avoid pulling from AWS
#22
kyleoconnell
closed
1 week ago
0
.github workflows CI
#21
kyleoconnell
closed
4 months ago
0
[Internal] [Feature] Draw bandage plots
#20
mikeyweigand
closed
1 week ago
1
[Internal] [Bug] Unicycler contig count not captured correctly
#19
mikeyweigand
opened
9 months ago
0
[Internal] [Bug] Move Kraken DB to AWS Open Data Bucket
#18
kyleoconnell
closed
1 week ago
0
[Internal] [Feature] Upgrade human reference in krakendb to T2T human reference
#17
kyleoconnell
opened
10 months ago
1
[Internal] [Bug] Update all Documentation to include subworkflows, new params, and graph recon updates
#16
jessicarowell
opened
10 months ago
0
[Internal] [Bug] CREATE_SAMPLESHEET names the samplesheet null_samplesheet.csv if no project name given
#15
jessicarowell
closed
5 months ago
0
[Internal] [Bug] Check why output is not in nextflow.config
#14
jessicarowell
closed
1 week ago
0
[Internal] [Feature] Create unit tests via nf-test
#13
kyleoconnell
opened
10 months ago
0
Update usage.md to reformat kraken2 db creation sets
#12
kyleoconnell-CDC
closed
10 months ago
2
Fix Kraken2 Documentation formatting under docs/usage
#11
kyleoconnell
closed
10 months ago
0
Issue7: update README
#10
jessicarowell
closed
11 months ago
0
Issue4: Update github issue templates
#9
jessicarowell
closed
11 months ago
0
remove include line for cdc.config post migration
#8
jessicarowell
closed
11 months ago
0
Update README.md
#7
jessicarowell
closed
11 months ago
2
Update the rest of the .github files
#6
jessicarowell
opened
11 months ago
2
Pipeline won't run when cdc.config file missing
#5
jessicarowell
closed
11 months ago
3
Update issue templates
#4
mikeyweigand
closed
11 months ago
1
Update CI
#3
mikeyweigand
closed
9 months ago
3
Update graph reconstruction container location
#2
mikeyweigand
closed
6 months ago
2
Test samplesheet needed
#1
mikeyweigand
closed
1 week ago
1