Repository that stores datasets used in different COVID CEID projects.

The datasets in the repository were compiled by members of the CEID COVID-19 working group. The data at the top level of the repository have been formated to be used 'as-is' and are updated often. Data sets were either created from html scraping or manually entered. In the case of the automated web scraping, the raw data and scripts are organized into sub-directories. The description of each data file along with the corresponding sub-directories are listed below. The metadata is in the readme of the same directory as the data.

China data

China_casedata
China_TA: Travel advisories or restrictions within China.
Hubei_Evacuation_Repatriation: Reports of evacuations from Hubei province.

US data

US_wikipedia_cases_fatalities/UScases_by_state_wikipedia.csv: Number of new cases in a state by day.
US_wikipedia_cases_fatalities/USfatalities_by_state_wikipedia.csv: Number of new case fatalities in a state by day.

us-state-intervention-data/stateInterventionTimeSeries.csv: Reshaped version of longFormStateInterventions.csv that includes the intervention status of all US states on each date since the beginning of the outbreak. Updated daily.
us-state-intervention-data/longFormStateInterventions.csv: Running summary of interventions at the state level taken from reports and wikipedia

COVID-19-ILI-forecasting/us_cases_data_weekly.csv: weekly counts of newly reported cases in each MMWR week by state and territory (and NYC) in the United States

us_nursing_homes_HIFLD.csv: locations and some metadata (number of residents, beds, etc.) for nursing homes in all 50 states

us-airports.csv: list and location of airports in the US

us-early-linelist/US_early_linelist.xlsx: Individual infection histories of US COVID19 cases from early in the outbreak that were manually collected from media reports.

Georgia Data

ga-county-intervention-data/countyInterventionTimeSeries.csv: Reshaped version of longFormStateInterventions.csv that includes the intervention status of all US states on each date since the beginning of the outbreak. Updated daily.
ga-county-intervention-data/longFormCountyInterventions.csv: Running summary of interventions at the state level taken from reports and wikipedia

ga_DGPH_daily_status_report: daily cases, fatatliies, and tests in the state of Gerogia. Also includes demography about cases. GA-DPH-CanvasJS-data-cases-deaths.csv is an alternate scrape of this data.

georgia_icu_beds.csv: number of icu beds by county for Georgia

Global

global_cases_by_country/worldCases.csv: Number of new cases in a country by day.
global_cases_by_country/worldFatalities.csv: Number of new fatalities in a country by day.

International_TA: Travel advisories announced by county.
Global Health Security Index (GHSI): Index of epidemic preparednessa and underlying data
Epidemiological characteristics of COVID-19 and other zoonotics)
Canada COVID-19 Case Data: Includes cases, fatalities, recovered, and tested for Canada
global_exposure_locations.csv: information on where cases were exposed to the virus
global_first_case.csv: First case for every ADM1 globally
Global Google Mobility Report: Daily mobility data by country for the globe beginning in Feb 2020. Disaggregated by types of places visitied.

How to add new data?

Please follow the data protocols outlines here. Use the template below to add metadata about your dataset to its subdirectory, and add the name of the dataset to this master README.

Data_name

Here is some discription of how the data is collected, when it is normally updated, etc.

Metadata:

Source: Link to data source if pulled from single website (ie. Wikipedia, etc.)

Related subdirectory and/or files

Projects List/Link related projects

License

See License.txt

Contact John Drake (jdrake@uga.edu) for questions.