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CFSAN-Biostatistics
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shigatyper
CFSAN Shigella Typing Pipeline
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classification inconsitencies based on low coverage genes
#18
gjordaopiedade
closed
1 month ago
3
Boydii serotypes 6 and 10 depth issues
#17
gerisullivan
closed
6 months ago
1
fix `shigatyper --version` inconsistency - update to __init__.py to 2.0.5
#16
kapsakcj
closed
1 year ago
3
fix S. flexneri serotype prediction; update GHActions
#15
kapsakcj
closed
1 year ago
2
Incorporate patches from Bioconda
#14
rpetit3
closed
1 year ago
1
`-n sample_name` prefix not honored when writing output files
#13
kapsakcj
closed
1 year ago
4
version discrepancy
#12
kapsakcj
closed
1 year ago
5
Serotype prediction for Shigella flexneri
#11
nokcs
closed
1 year ago
10
Fix install process
#10
rpetit3
closed
2 years ago
0
Add single-end and ONT support, add GitHub Actions, update readme
#9
rpetit3
closed
2 years ago
13
add heparinase to reference fasta
#8
rpetit3
closed
2 years ago
4
Interest in single-end and nanopore read support?
#7
rpetit3
closed
2 years ago
1
Wrong prediction of Shigella Boydii serotype 20
#6
wolthuisr
opened
2 years ago
8
Fixed bug with file format of samtools so the tool will work on shiga…
#5
crashfrog
closed
2 years ago
0
Help: Two types of value errors
#4
wolthuisr
closed
2 years ago
7
Add license
#3
erinyoung
closed
2 years ago
4
Non-Illumina reads
#2
AntonMatiiv
closed
1 year ago
3
Command line usage
#1
ajkarloss
closed
5 years ago
9