COG-UK / B.1.1.7_spatial_analysis_UK

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B.1.1.7_spatial_analysis_UK

DOI

Commonly used acronyms

UTLA: Upper tier local authority

LTLA: Lower tier local authority

LAD: Local administrative district

Files in Data

In geographic_files:

In lookup_tables:

Scripts in Visualisations_and_analysis_scripts

Also contains Phylogeographic_visualisations_and_analyses which contains analysis files for the continuous phylogeographic analysis.

Data availability and access

Aggregated epidemiological data used in this study are available from https://coronavirus.data.gov.uk/details/download. SARS-CoV-2 infection survey data are available via the Office of National Statistics (ONS) and available from https://www.ons.gov.uk/peoplepopulationandcommunity/healthandsocialcare/conditionsanddiseases/datasets/coronaviruscovid19infectionsurveydata. Raw epidemiological SARS-CoV-2 line list data are available via Public Health England (PHE) and aggregated statistics are available via Github. All genomes, phylogenetic trees, basic metadata are available from the COG-UK consortium website (https://www.cogconsortium.uk/data). The O2 aggregated, anonymised mobile data insights dataset is not publicly available owing to stringent licensing agreements. Information on the process of requesting access to the O2 aggregated mobile data insights dataset is available o2@businesso2.co.uk. The Google COVID-19 Aggregated Mobility Research Dataset is not publicly available owing to stringent licensing agreements. Information on the process of requesting access to the Google mobility data is available from sadilekadam@google.com.

Genome sequences used were generated by the COG-UK consortium (https://www.cogconsortium.uk/). Data linking COG-IDs to location have been removed to protect privacy, however if you require this data please visit https://www.cogconsortium.uk/contact/ for information on accessing consortium-only data.