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COG-UK
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dipi-group
Data integrity and pipeline integration working group
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[manualpipe] ENA BAM 20211115
#163
SamStudio8
closed
2 years ago
0
[manualpipe] Elan 20211117
#162
SamStudio8
closed
2 years ago
0
[manualpipe] Elan 20211116
#161
SamStudio8
closed
2 years ago
0
[manualpipe] Elan 20211113
#160
SamStudio8
closed
2 years ago
1
[manualpipe] ENA BAM 20211108
#159
SamStudio8
closed
2 years ago
0
[manualpipe] Elan 20211111
#158
SamStudio8
closed
2 years ago
1
[manualpipe] Asklepian 20211111
#157
SamStudio8
closed
2 years ago
2
Modernise GISAID submission pipe
#156
SamStudio8
closed
2 years ago
1
[manualpipe] GISAID 20211108
#155
SamStudio8
closed
2 years ago
0
Outgrowing cephfs cache due to large directories reduces performance of post-Elan consensus building
#154
SamStudio8
closed
2 years ago
2
[manualpipe] Asklepian 20211109
#153
tombch
closed
2 years ago
1
Update webin-cli to unblock automated submissions
#152
SamStudio8
closed
2 years ago
2
[manualpipe] ENA Consensus 20211105
#151
SamStudio8
closed
2 years ago
1
[manualpipe] Elan 20211105
#150
SamStudio8
closed
2 years ago
3
[manualpipe] ENA BAM 20211025
#149
SamStudio8
closed
2 years ago
2
[manualpipe] GISAID 20211025
#148
SamStudio8
closed
2 years ago
0
Metadata file seems incomplete
#147
Jeltje
closed
2 years ago
2
>500 Delta sequences with 2020 dates, mostly England/MILK-[1FF99A3..MILK-203F521] with April 2020 dates
#146
AngieHinrichs
closed
2 years ago
6
Sequences contain question marks
#145
Jeltje
closed
2 years ago
6
cog_all.fasta etc. files not updated in 6 days?
#144
AngieHinrichs
closed
2 years ago
3
[validator] SUPERSCRIPT III - TAQMAN 7500
#143
happykhan
closed
2 years ago
5
[manualpipe] ENA BAM 20211004
#142
SamStudio8
closed
2 years ago
0
[manualpipe] Elan 20211008
#141
SamStudio8
closed
2 years ago
2
[manualpipe] status-generator 20211006
#140
SamStudio8
closed
2 years ago
1
[manualpipe] Elan 20211006
#139
SamStudio8
closed
2 years ago
1
[manualpipe] Elan 20211003
#138
SamStudio8
closed
2 years ago
1
[manualpipe] 20210927 ENA BAM
#137
SamStudio8
closed
2 years ago
3
[manualpipe] 20210920 ENA BAM
#136
SamStudio8
closed
2 years ago
3
[manualpipe] ENA BAM 20210913
#135
SamStudio8
closed
2 years ago
0
mismatching dates in a few GenBank/ENA vs. BioSample records
#134
AngieHinrichs
closed
2 years ago
3
[manualpipe] ENA BAM 20210906
#133
SamStudio8
closed
3 years ago
3
Minutes 22-2021-09-01
#132
SamStudio8
closed
3 years ago
0
[manualpipe] ENA BAM 20210830
#131
SamStudio8
closed
3 years ago
5
[manualpipe] Elan 20210830
#130
SamStudio8
closed
3 years ago
5
samtools depth identified as bottleneck in Elan
#129
SamStudio8
closed
3 years ago
2
[manualpipe] ENA BAM 20210823
#128
SamStudio8
closed
3 years ago
6
[manualpipe] ENA BAM 20210816
#127
SamStudio8
closed
3 years ago
2
[manualpipe] Elan 20210816
#126
SamStudio8
closed
3 years ago
3
[ocarina] Update Ocarina to 0.44.0
#125
SamStudio8
closed
3 years ago
0
[manualpipe] accessions-export 20210814
#124
SamStudio8
closed
3 years ago
2
[manualpipe] Asklepian 20210811
#123
BioWilko
closed
3 years ago
1
Manualpipe issue template changes
#122
BioWilko
closed
3 years ago
1
[manualpipe] Asklepian 20210810
#121
BioWilko
closed
3 years ago
5
[manualpipe] GISAID 20210809
#120
SamStudio8
closed
3 years ago
0
MQTT handlers could respond to a reboot roll call
#119
SamStudio8
closed
3 years ago
1
Update Splunk endpoint
#118
SamStudio8
closed
3 years ago
1
Switch Asklepian datafunk to gofasta for great gains
#117
SamStudio8
closed
3 years ago
5
[manualpipe] ENA BAM 20210802
#116
SamStudio8
closed
3 years ago
2
[manualpipe] Elan 20210802
#115
SamStudio8
closed
3 years ago
0
Fix Ocarina OAuth2 token update race condition
#114
SamStudio8
closed
3 years ago
2
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