combattbmodel

The COMBAT-TB graph model is a Chado-derived graph model for genome annotation.

Overview

The graph model is based on the following Chado modules:

• CV
• Sequence
• Publication

A diagram depicting the Graph model can be found here, with the accompanying documentation here.

Installation

$ virtualenv envname
$ source envname/bin/activate
$ pip install -i https://test.pypi.org/simple/ combattbmodel
$ python

>>> import combattbmodel
>>> combattbmodel.name
'combattbmodel'
>>> from combattbmodel.core import Gene
>>> gene = Gene()
>>> gene.so_id
u'SO:0000704'
>>>