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COMBINE-lab
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oarfish
long read RNA-seq quantification
BSD 3-Clause "New" or "Revised" License
71
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3
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Dealing with sorted bam files
#38
AhmedSAHassan
opened
12 hours ago
1
Clarification on "supplementary alignment" in logs
#37
iza-mcac
opened
1 day ago
1
Minimap2 rs changes
#36
jguhlin
closed
2 days ago
0
Feature request: read-level probabilities
#35
andyjslee
closed
1 week ago
4
Inferential replicates and .pq file creation
#34
margaux-david
closed
12 hours ago
2
Question: Oarfish suitable for Quantifying Haplotype-Resolved Transcriptomes
#33
nadjano
opened
1 month ago
0
fix: 0-1 alignment position issue in read-based mode
#32
rob-p
closed
2 months ago
0
BAM sorting for single-cell mode
#31
ChangqingW
closed
3 months ago
1
Dev
#30
rob-p
closed
3 months ago
0
merge main changes into dev
#29
rob-p
closed
3 months ago
0
merge main back into dev
#28
rob-p
closed
3 months ago
0
Dev
#27
rob-p
closed
3 months ago
0
chore: Improve Github README by replacing with symlink to docs/index.md
#26
corneliusroemer
closed
3 months ago
0
chore: also make linux-aarch64 and musl builds
#25
corneliusroemer
closed
3 months ago
0
chore: add basic ci
#24
corneliusroemer
opened
3 months ago
0
doc: list installation options
#23
corneliusroemer
closed
3 months ago
0
Where does the oarfish-installer.sh come from?
#22
corneliusroemer
closed
3 months ago
1
Merge dev into main
#21
rob-p
closed
4 months ago
0
Dev scaledcov kde
#20
rob-p
closed
4 months ago
0
Are there auxillary files output similar to salmon?
#19
callumparr
closed
3 months ago
5
Could minimap2 settings be recommended in documentation?
#18
mpmargolis
closed
3 months ago
2
Can't find oarfish executable file after cloning from the Github repository
#17
alanlamsiu
closed
5 months ago
5
update cargo dist
#16
rob-p
closed
8 months ago
0
Dev
#15
rob-p
closed
8 months ago
0
Add option to use UMI information from BAM files (MI or RX tag)
#14
gringer
opened
8 months ago
0
Harmonise output format to that of Salmon
#13
gringer
opened
8 months ago
7
docs
#12
rob-p
closed
9 months ago
0
Merge pull request #10 from COMBINE-lab/dev
#11
rob-p
closed
9 months ago
0
mereg dev into main
#10
rob-p
closed
9 months ago
0
Merge pull request #8 from COMBINE-lab/dev
#9
rob-p
closed
9 months ago
0
Dev
#8
rob-p
closed
9 months ago
0
Installation issue
#7
katsikora
closed
9 months ago
2
Merge main back into dev
#6
rob-p
closed
9 months ago
0
Dev
#5
rob-p
closed
9 months ago
0
Integration
#4
rob-p
closed
9 months ago
0
merge README chagnes from main into integration
#3
rob-p
closed
9 months ago
0
Incorrect check for aligner
#2
dpryan79
closed
9 months ago
1
Dev
#1
rob-p
closed
1 year ago
0